Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Hail helper functions for the gnomAD project and Translational Genomics Group

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

A simple command-line tool to download data from Joint Genome Institute databases

Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

Repository for the TRANSIT and TPP tools developed by the Ioerger Lab

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"

A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

Supplementary repository for "Efficient and robust search of microbial genomes via Phylogenetic Compression"

A pipeline based on unmapped reads, which combines different tools for extends contigs and closing gaps present in the genomes

model and training of my HIgh Risk Project: Genetic Feature Detection on Breast Cancer Subtypes

Python implementation of a program designed to create the reverse complement of a genome

The published study can be accessed on https://www.mdpi.com/1999-4915/12/12/1414

Repository accompanying review in avian genomes by Bravo et al.

Download genomes from NCBI GenBank FTP site

read data generator

🪛 Fetch ncbi metadata for sra and assemblies