akshayparopkari / RNAseq Star 6 Code Issues Pull requests Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data visualization open-source quality-control rna-seq r python3 preprocess fungi bash-script differential-expression sequence-alignment candida-albicans Updated May 9, 2023 Shell
snewhouse / exotic-dna-ngs Star 2 Code Issues Pull requests WIP & POC: Count Viral and other non-human genome signatures in Human NGS data bash docker bioinformatics nextflow genetics ngs fungi bacteria viral clinical-research ngs-analysis ngs-pipeline Updated Aug 15, 2017 Shell
Rowena-h / EndophyteGenomes Star 1 Code Issues Pull requests Scripts for Hill et al. (2023) doi:10.1093/gbe/evad038 🌿 bioinformatics phylogenetics genome-annotation fungi genome-assembly Updated Apr 28, 2023 Shell
Andrea-Sachez-Vallet-group-CBGP / PetriDish_QRdecoder Star 0 Code Issues Pull requests QR pipeline to generate QR codes to label petri dishes and automatically rename the pictures taken afterwards agriculture microbiology fungi zymoseptoria biocontrol Updated Jun 4, 2024 Shell
stajichlab / Afum_EVOL20 Star 0 Code Issues Pull requests Identification of SNPs in EVOL20 strain of A. fumigatus bioinformatics-pipeline fungi variant-calling Updated Dec 10, 2018 Shell