AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

creating hybrid-gene phylogenetic trees for diversity analyses

Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes

A spatially explicit trait- and individual-based microbial systems modelling framework

Domingo Fermenter software source code

Fungal Validation and Identification Pipeline

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.

GenBank Record downloader for taxonomists

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

Tool to predict eukaryotic signal peptides. In addition, prediction of toxin and fungi signal peptides is also done.

Antimicrobial activity prediction for fungal effector candidates

SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries

🦠 SporeFlow: 16S, ITS and TEF1 metataxonomics pipeline

f-BGM enables fungi-specific genome mining in high accuracy and interpretability

Assemblies, MATA/MATB regions and source data from Peris et al 2022

Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.

Some regression on fungi spotted at Mary Carroll Park.

web scrapping

Script python permettant de télécharger les séquences de la base de donnée JGI.