viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

An ensemble of plasmid classification tools

Nanopore sequencing experimental protocols and computational pipelines

WIP & POC: Count Viral and other non-human genome signatures in Human NGS data

example genomics workflow for student training

Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.

to adjust an old reference genome

MongoDB scripts and data

Identifying pathogenic bacteria