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1. obrien-lab/cg_simtk_protein_folding obrien-lab/cg_simtk_protein_folding Public

   A toolkit for building CG model of protein/ribosome and MD simulation protocols for protein co- and post-translational folding

   Python 7

2. obrien-lab/Activation-Energy-Estimation-Workflow obrien-lab/Activation-Energy-Estimation-Workflow Public

   A workflow to estimate activation free energy for a protein structure obtained from a coarse-grained simulation

   Python 5

3. obrien-lab/avoid-misfolding-into-non-covalent-lasso-entanglements-using-small-molecule-drugs obrien-lab/avoid-misfolding-into-non-covalent-lasso-entanglements-using-small-molecule-drugs Public

   Code and data for the paper "It is theoretically possible to avoid misfolding into non-covalent lasso entanglements using small molecule drugs"

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4. obrien-lab/visualize_entanglements obrien-lab/visualize_entanglements Public

   This repository includes the interactive website (click the link below) that visualizes the example misfolded structures observed in our simulations that containes non-native entanglements. PDB str…

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