Add a --trim option to use quality score for trimming from read ends (#51)

Full Changelog: v0.9.2...v0.10.0b

Remove the explicit max i32 as a default value for max length, and some other optimizations

Full Changelog: v0.9.1...v0.9.2

Full Changelog: v0.9.0...v0.9.1

What's Changed

• Add GC content parameter --mingc --maxgc by @JMencius in #30
• enhance -i performace by @JMencius in #32
• add gzip/xz/bzip2 support for input by @sharkLoc in #34

New Contributors

• @sharkLoc made their first contribution in #34

Full Changelog: v0.8.0...v0.9.0

Let me know if a musl build is necessary for someone!

This release includes multithreaded minimap2 for contamination checking as contributed by @Ge0rges and reading from a file (rather than stdin) as contributed by @JMencius

What's Changed

• Make use of faster preset and multithreaded minimap2 by @Ge0rges in #26
• Add straightforward --input by @JMencius in #29

New Contributors

• @Ge0rges made their first contribution in #26
• @JMencius made their first contribution in #29

Full Changelog: v0.7.0...v0.8.0

In some cases contaminants were not removed #19, and to solve this alignment accuracy is improved by using with_cigar()

This PR incorporates the improvements made by @jvkersch in #11

This release corrects a bug, that lead to wrong quality score calculation when simultaneously removing a contaminant.

This release adds a --maxqual option