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Questions regarding the software output results

Status: Open.

#617 In tseemann/snippy;

· lanlan0210 opened on Jun 17, 2025

Failure to extract bases from fasta reference

Status: Open.

#616 In tseemann/snippy;

· cizydorczyk opened on Jun 10, 2025

Unfixed_SNPs_Calling

Status: Open.

#615 In tseemann/snippy;

· Tuberculosis-Public-Health-Lab opened on Jun 10, 2025

Region limitation error in Snippy final.vcf

Status: Open.

#614 In tseemann/snippy;

· KuBaLa-biomedicine opened on May 19, 2025

Error trying to use snippy with GBK reference: snps.log

Status: Open.

#613 In tseemann/snippy;

· raeldesu opened on Apr 25, 2025

Error following samclip and bam_sort_core

Status: Open.

#611 In tseemann/snippy;

· mweberr opened on Mar 17, 2025

PackagesNotFoundError unable to install snp-sites and snippy via bioconda

Status: Open.

#610 In tseemann/snippy;

· gloriajzhou opened on Mar 13, 2025

Error in snippy-vcf_to_tab when features overlap

Status: Open.

#609 In tseemann/snippy;

· pablo-aja-macaya opened on Feb 24, 2025

Zero variants identified using snippy 4.6.0, 4.6.0-5 recipe on bioconda - error due to "vt normalize" at the filtering step

Status: Open.

#608 In tseemann/snippy;

· stefcamp opened on Feb 4, 2025

Homebrew install fails due to dependency: openssl@1.1 has been disabled because it is not supported upstream! It was disabled on 2024-10-24.

Status: Open.

#607 In tseemann/snippy;

· joelewis101 opened on Jan 28, 2025

Error message: Got a sequence without letters. Could not guess alphabet

Status: Open.

#606 In tseemann/snippy;

· Alessandra-23 opened on Jan 22, 2025

snippy-multi "No SNPs were detected

Status: Open.

#605 In tseemann/snippy;

· beryl-au opened on Jan 9, 2025