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options to remove only soft clips or hard clips

Status: Open.

#19 In tseemann/samclip;

· jflot opened on Nov 3, 2022

Unexpected inversion behaviour. Removes a few % more reads, not returning the removed reads.

Status: Open.

#18 In tseemann/samclip;

· StarburstCLA opened on Feb 22, 2022

problem using --max 0: keeps soft reads

Status: Open.

#17 In tseemann/samclip;

· emlec opened on May 11, 2021

Remove clipped bases?

Status: Open.

#15 In tseemann/samclip;

· apredeus opened on Jan 5, 2021

problem using --max to keep only reads with large clippings

Status: Open.

#13 In tseemann/samclip;

· jflot opened on Dec 27, 2020

Using --max hasn't worked

Status: Open.

#12 In tseemann/samclip;

· eoziolor opened on Jun 15, 2020

Clipped reads not removed

Status: Open.

#11 In tseemann/samclip;

· annecmg opened on Jun 9, 2020

zero clipping at the beginning of the read

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In tseemann/samclip;

· avilella opened on Jan 3, 2019

Can it handle paired-end data?

enhancementNew feature or requestNew feature or request

Status: Open.

#7 In tseemann/samclip;

· fgvieira opened on Jan 2, 2019

min clip length

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In tseemann/samclip;

· Edison2021 opened on Sep 6, 2018

Underestimation of alignment end position for long-reads

enhancementNew feature or requestNew feature or request

Status: Open.

#5 In tseemann/samclip;

· Adamtaranto opened on Aug 23, 2018