Toolbox for molecular animations in Blender, powered by Geometry Nodes.

A comprehensive library for computational molecular biology

A dependency-free cross-platform swiss army knife for PDB files.

An all-atom protein structure dataset for machine learning.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

RiboNucleic Acid (RNA) Language Model

A Python framework for structural systems biology

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

Control PyMOL sessions via IPython

Set of useful HADDOCK utility scripts

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Toolkit for structure-based deep learning on RNA.

Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).

Python package built around protein structure and dynamics. OpenBabel-inspired objects.

mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data

A Modular Platform for Streamlining Automated Cryo-FIB Workflows