NicheNet: predict active ligand-target links between interacting cells

A multi-level integration algorithm for sensitive integration, reference-mapping, and cell state identification in single-cell data.

ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

Go Sales Product Dashboard using shinydashboard from R + Railway PostgreSQL Data Warehouse

Batch-Effect Reduction Trees

multimedia is an R package for multimodal mediation analysis of microbiome data. It has been designed to help integration of relative abundance, survey, and metabolomic data through causal mediation analysis.

Integrating pathways and related knowledge in a multilayer framework

R package for integrative analysis of several related data matrices

This project analyzes key factors influencing member renewals for the Pittsburgh Technology Council. Using advanced statistical techniques and survival modeling, it explores scorecard usage, event participation, and engagement strategies to provide actionable insights for improving member retention.

A knowledge graph on queer history

Fast, sensitive and accurate integration of single-cell data with Harmony

FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis

Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.

Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.

Sipe H, IN Keren, and SJ Converse. 2023. Integrating community science and agency-collected monitoring data to expand monitoring capacity at large spatial scales. Ecology and Evolution.

Sorel MH, JC Jorgensen, RW Zabel, MD Scheuerell, AR Murdoch, CM Kamphaus, SJ Converse. 2023. Incorporating life history diversity in an integrated population model to inform viability analysis. Canadian Journal of Fisheries and Aquatic Sciences.

Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.

R package for finding a joint low-rank representation for a collection of matrices with shared row or column entities.

This repository contains data, code and oputputs related to the paper titled "Estimating annual bilateral migration flows in South America through correcting for measurement errors in census data"