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Common Workflow Language

CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

Here are 11 public repositories matching this topic...

ga4gh / tool-registry-service-schemas

APIs for discovering genomics tools, their metadata and their containers

api workflow tool wdl ga4gh cwl

Updated Jul 30, 2025
Shell

Daylily-Informatics / daylily-ephemeral-cluster

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

aws bioinformatics scalable ec2 ngs slurm budgeting bioinformatics-pipeline informatics scaling cwl wgs ephemeral genomic-data-analysis human-genome aws-parallelcluster snv-call giab aws-parallel-cluster

Updated Jul 28, 2025
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antonjan / Raspberry_Telemetry

This project will have the files for a Cube Sat Telemetry system Using Raspberry Pi Transmitter Board

command satellite telemetry sdr cwl aprs balloon afsk ax25 transponder direwolf

Updated Feb 15, 2018
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rawgene / rawg

RNA-Seq Analysis Workflow Generator

rna-seq cwl rna-seq-analysis

Updated Nov 15, 2019
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ICGC-TCGA-PanCancer / OxoG-Dockstore-Tools

A CWL version of the Seqware OxoG workflow. This repository also contains scripts and dockerfiles used by the stand-alone versions of these components.

cwl pcawg oxog-filtering snv-annotation indel-annotation minibam

Updated Nov 30, 2018
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dockstore / batch_wrapper

This Docker container is used to demonstrate the ability to run Dockstore tools and workflows in online batch services such as AWS Batch and Azure Batch.

docker aws azure batch cwl

Updated May 24, 2017
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CNRGH / WMS-benchmark

Workflow management system benchmark

snakemake nextflow wdl pegasus cwl workflow-management-system cromwell toil cwltoil

Updated Jun 3, 2020
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dockstore / dockstore-documentation

The documentation for Dockstore.org

workflow nextflow tool wdl cwl hacktoberfest dockstore

Updated Aug 7, 2025
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GA4GH-DREAM / dockstore-tool-synapse-submit

ga4gh cwl synapse dream

Updated Jul 17, 2017
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hisplan / vagrant-ubuntu-singularity-cwl

vagrant singularity cwl

Updated Feb 13, 2017
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terradue-ogc-dp21 / rcm-metadata

CWL Workflow to harvest RCM EO data and optionally publish them to S3

cwl workflows eo radarsat

Updated Jan 20, 2022
Shell

Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community

Released January 2015

Followers: 14 followers
Organization: common-workflow-language
Website: github.com/topics/cwl
Wikipedia: Wikipedia