#

clustering

Here are 477 public repositories matching this topic...

mlr-org / mlr

Machine Learning in R

Updated Aug 22, 2025
R

jokergoo / ComplexHeatmap

Make Complex Heatmaps

clustering heatmap complex-heatmaps

Updated Jun 23, 2025
R

TheAlgorithms / R

Collection of various algorithms implemented in R.

learning education machine-learning data-mining algorithm r practice algorithms clustering regression classification r-language preprocessing hacktoberfest r-programming datamanipulation

Updated Apr 19, 2025
R

asardaes / dtwclust

R Package for Time Series Clustering Along with Optimizations for DTW

time-series clustering dtw

Updated Jul 23, 2024
R

lazappi / clustree

Visualise Clusterings at Different Resolutions

visualization cran clustering visualisation clustering-trees

Updated Jun 21, 2025
R

iSEE / iSEE

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

visualization gui shiny clustering gene-expression feature-extraction transcriptomics single-cell hacktoberfest dimension-reduction human-cell-atlas

Updated Jul 8, 2025
R

faridcher / ml-course

Starter code of Prof. Andrew Ng's machine learning MOOC in R statistical language

machine-learning neural-network clustering svm linear-regression pca classification recommender-system regularization gradient-descent k-means anomalydetection principal-component-analysis learning-curve

Updated Jul 19, 2025
R

TatevKaren / mathematics-statistics-for-data-science

Mathematical & Statistical topics to perform statistical analysis and tests; Linear Regression, Probability Theory, Monte Carlo Simulation, Statistical Sampling, Bootstrapping, Dimensionality reduction techniques (PCA, FA, CCA), Imputation techniques, Statistical Tests (Kolmogorov Smirnov), Robust Estimators (FastMCD) and more in Python and R.

bootstrap r clustering linear-regression python3 pca-analysis probability-distribution dimensionality-reduction monte-carlo-simulation rejection-sampling importance-sampling regression-analysis data-imputation inverse-transform-method factor-analysis-methods statistcal-tests canonical-correlation

Updated Apr 16, 2024
R

PaulingLiu / ROGUE

Assessing the purity of single cell population

clustering scrna-seq quantification purity

Updated Jun 3, 2022
R

rezakj / iCellR

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

clustering dropout batch-normalization imputation scrna-seq diffusion-maps clustering-algorithm 3d umap normalization 10xgenomics cell-type-classification intractive-graph cite-seq singel-cell-sequencing pseudotime scvdj-seq icellr

Updated Jul 10, 2024
R

crazyhottommy / scclusteval

Single Cell Cluster Evaluation

ggplot2 clustering rstats scrnaseq

Updated Jul 28, 2021
R

caravagnalab / revolver

Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data

clustering phylogenetic-trees survival-analysis

Updated Dec 25, 2022
R

spectralGraphTopology

convexfi / spectralGraphTopology

Structured Graph Learning via Laplacian Spectral Constraints (NeurIPS 2019)

machine-learning clustering

Updated Sep 26, 2022
R

kerseviciute / aPEAR

Enrichment Networks for Pathway Enrichment Analysis

visualization enrichment r clustering network plot enrichment-analysis pathway gsea

Updated Apr 14, 2023
R

dlab-berkeley / Unsupervised-Learning-in-R

Workshop (6 hours): Clustering (Hdbscan, LCA, Hopach), dimension reduction (UMAP, GLRM), and anomaly detection (isolation forests).

clustering dimensionality-reduction unsupervised-learning umap hdbscan isolation-forests glrm latent-class-analysis

Updated Jun 8, 2020
R

PascalKieslich / mousetrap

Process and Analyze Mouse-Tracking Data

visualization r analysis clustering mouse-tracking

Updated Aug 14, 2025
R

lmweber / cytometry-clustering-comparison

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

bioinformatics clustering comparison single-cell cytof flow-cytometry mass-cytometry

Updated Feb 15, 2017
R

tirthajyoti / R-stats-machine-learning

Misc Statistics and Machine Learning codes in R

machine-learning r statistics neural-network random-forest clustering regression classification nearest-neighbors k-means decision-trees support-vector-machines hypothesis-testing principal-component-analysis

Updated Mar 20, 2021
R

pipeComp

plger / pipeComp

A R framework for pipeline benchmarking, with application to single-cell RNAseq

benchmark clustering pipelines bioconductor single-cell-rna-seq pipeline-benchmarking

Updated Nov 2, 2021
R

Japrin / sscClust

simpler single cell RNAseq data clustering

bioinformatics genomics clustering immunology single-cell

Updated Feb 28, 2025
R

Improve this page

Add a description, image, and links to the clustering topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the clustering topic, visit your repo's landing page and select "manage topics."