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Description

DCO Affirmation

I affirm that all code in every commit of this pull request conforms to the terms of the Topoteretes Developer Certificate of Origin.

@borisarzentar borisarzentar self-assigned this Mar 28, 2025
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pull-checklist bot commented Mar 28, 2025

Please make sure all the checkboxes are checked:

  • I have tested these changes locally.
  • I have reviewed the code changes.
  • I have added end-to-end and unit tests (if applicable).
  • I have updated the documentation and README.md file (if necessary).
  • I have removed unnecessary code and debug statements.
  • PR title is clear and follows the convention.
  • I have tagged reviewers or team members for feedback.

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coderabbitai bot commented Mar 28, 2025

Walkthrough

This pull request introduces several modifications across the repository. A period was added to the pull request template for grammatical correctness. The add function’s import source in the API was updated, and the function logic was simplified by removing detailed file handling. The deprecated add_v2 file was removed. Pipeline run logging functions were updated to include a new pipeline_name parameter, and the corresponding database models were updated. Additionally, default log levels were adjusted, and the ingestion pipeline name was renamed.

Changes

File(s) Change Summary
.github/pull_request_template.md Appended a period to the DCO affirmation statement.
cognee/api/v1/add/[__init__.py, add.py, add_v2.py] Updated the add function import from add_v2 to add, simplified data ingestion logic in add.py, and removed the unused add_v2.py file.
cognee/modules/pipelines/models/PipelineRun.py Added a new pipeline_name column to the PipelineRun model.
cognee/modules/pipelines/operations/[log_pipeline_run_complete.py, log_pipeline_run_error.py, log_pipeline_run_start.py] Modified function signatures to include a new pipeline_name parameter, updated internal logging calls, and removed unnecessary imports.
cognee/modules/pipelines/operations/run_tasks.py Updated logging calls to include pipeline_name in the run_tasks function.
cognee/shared/logging_utils.py Changed default log levels from INFO to None and added warning suppression for specific SQLAlchemy warnings.
cognee/tasks/ingestion/ingest_data.py Renamed the pipeline from "file_load_from_filesystem" to "metadata_extraction_pipeline" and added a blank line for improved readability.
cognee/tests/test_neo4j.py Updated assertion in the main function to check for a length of 8 in the history variable.
cognee/infrastructure/databases/graph/networkx/adapter.py Removed unused import statement for text from SQLAlchemy.
cognee/infrastructure/databases/relational/[create_db_and_tables.py, sqlalchemy/SqlAlchemyAdapter.py] Simplified database creation logic and updated deletion logic in the SqlAlchemyAdapter.

Sequence Diagram(s)

sequenceDiagram
    participant Client
    participant RunTasks
    participant Logger
    Client->>RunTasks: Initiates tasks with pipeline_name
    RunTasks->>Logger: log_pipeline_run_start(pipeline_id, pipeline_name, dataset_id, data)
    alt Tasks succeed
        RunTasks->>Logger: log_pipeline_run_complete(pipeline_run_id, pipeline_id, pipeline_name, dataset_id, data)
    else Tasks fail
        RunTasks->>Logger: log_pipeline_run_error(pipeline_run_id, pipeline_id, pipeline_name, dataset_id, data, error)
    end
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Actionable comments posted: 0

🧹 Nitpick comments (3)
cognee/shared/logging_utils.py (1)

46-48: Environment-based log level configuration

This is a good enhancement that adds support for configuring log levels via the environment variable LOG_LEVEL. This follows the twelve-factor app methodology for configuration.

There's a minor typo in the variable name loggin_name_mapping (should be logging_name_mapping).

-    loggin_name_mapping = logging.getLevelNamesMapping()
+    logging_name_mapping = logging.getLevelNamesMapping()
-    log_level = log_level if log_level else loggin_name_mapping[os.getenv("LOG_LEVEL", "INFO")]
+    log_level = log_level if log_level else logging_name_mapping[os.getenv("LOG_LEVEL", "INFO")]
cognee/api/v1/add/add.py (2)

24-34: Consider a more robust approach for the first_run logic.

Attaching a static attribute to the function works but can be error-prone if the process restarts or the function is reloaded in certain contexts. A module-level or configuration-based flag might be more transparent.


46-47: Consider using logger instead of print statements.

Although printing the pipeline status can be helpful when debugging locally, using the logger would keep output consistent and more flexible for production environments.

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Reviewing files that changed from the base of the PR and between de5b7f2 and 4fca892.

⛔ Files ignored due to path filters (2)
  • poetry.lock is excluded by !**/*.lock, !**/*.lock
  • pyproject.toml is excluded by !**/*.toml
📒 Files selected for processing (11)
  • .github/pull_request_template.md (1 hunks)
  • cognee/api/v1/add/__init__.py (1 hunks)
  • cognee/api/v1/add/add.py (1 hunks)
  • cognee/api/v1/add/add_v2.py (0 hunks)
  • cognee/modules/pipelines/models/PipelineRun.py (1 hunks)
  • cognee/modules/pipelines/operations/log_pipeline_run_complete.py (2 hunks)
  • cognee/modules/pipelines/operations/log_pipeline_run_error.py (2 hunks)
  • cognee/modules/pipelines/operations/log_pipeline_run_start.py (2 hunks)
  • cognee/modules/pipelines/operations/run_tasks.py (2 hunks)
  • cognee/shared/logging_utils.py (4 hunks)
  • cognee/tasks/ingestion/ingest_data.py (2 hunks)
💤 Files with no reviewable changes (1)
  • cognee/api/v1/add/add_v2.py
🧰 Additional context used
🧬 Code Definitions (4)
cognee/api/v1/add/__init__.py (1)
cognee/api/v1/add/add.py (1)
  • add (15-47)
cognee/modules/pipelines/operations/log_pipeline_run_error.py (1)
cognee/modules/pipelines/models/PipelineRun.py (2)
  • PipelineRun (14-26)
  • PipelineRunStatus (8-11)
cognee/modules/pipelines/operations/run_tasks.py (3)
cognee/modules/pipelines/operations/log_pipeline_run_start.py (1)
  • log_pipeline_run_start (8-35)
cognee/modules/pipelines/operations/log_pipeline_run_complete.py (1)
  • log_pipeline_run_complete (8-35)
cognee/modules/pipelines/operations/log_pipeline_run_error.py (1)
  • log_pipeline_run_error (8-41)
cognee/api/v1/add/add.py (2)
cognee/modules/pipelines/operations/run_tasks.py (1)
  • run_tasks (272-297)
cognee/tasks/ingestion/ingest_data.py (1)
  • ingest_data (17-153)
🪛 Ruff (0.8.2)
cognee/api/v1/add/__init__.py

1-1: .add.add imported but unused; consider removing, adding to __all__, or using a redundant alias

(F401)

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  • GitHub Check: docker-compose-test
🔇 Additional comments (28)
cognee/shared/logging_utils.py (5)

17-17: Improved flexibility in log level configuration

The default value for level has been changed from INFO to None, which will allow for more dynamic log level determination based on environment variables or other configuration sources.


22-22: Documentation update to reflect parameter change

The documentation has been updated to accurately reflect that the default value for the level parameter is now None.


35-35: Improved flexibility in setup_logging configuration

Changing the default value of log_level from INFO to None allows for more flexible configuration of logging levels through environment variables.


39-39: Documentation update to reflect parameter change

The documentation has been updated to accurately reflect the new default behavior of the log_level parameter.


141-151: Suppression of SQLAlchemy warnings for higher log levels

Good addition of conditional warning filters to suppress specific SQLAlchemy warnings when the log level is set higher than WARNING. This helps reduce noise in logs when running in production environments where these warnings might not be relevant.

.github/pull_request_template.md (1)

7-7: Grammar fix in DCO Affirmation

Added a period at the end of the sentence for proper punctuation.

cognee/modules/pipelines/models/PipelineRun.py (1)

23-23: Added pipeline_name column to PipelineRun model

The addition of the pipeline_name column is in line with the PR objectives and will enhance the logging and tracking capabilities of pipeline runs by providing a human-readable identifier.

cognee/api/v1/add/__init__.py (1)

1-1:

✅ Verification successful

Updated import source for add function

The import has been changed from add_v2 to add, which aligns with the removal of the add_v2.py file mentioned in the PR summary. This is a good change that clarifies the correct source of the function.

Note: The static analysis tool flagged this import as unused, but this is likely a false positive as __init__.py files typically re-export symbols to make them available at the package level.


🏁 Script executed:

#!/bin/bash
# Check if the add function is imported elsewhere in the codebase
rg -l "from cognee.api.v1.add import add" --type py

Length of output: 97


Import Update Verified: Approved

The updated import source in cognee/api/v1/add/__init__.py has been validated. The add function is correctly re-exported and its usage has been confirmed in cognee/api/v1/add/routers/get_add_router.py. This change properly replaces the removed add_v2 and clarifies the correct source of the function. The false positive flag from the static analysis tool can be safely ignored.

🧰 Tools
🪛 Ruff (0.8.2)

1-1: .add.add imported but unused; consider removing, adding to __all__, or using a redundant alias

(F401)

cognee/tasks/ingestion/ingest_data.py (2)

21-21: Pipeline name change reflects functionality more accurately

Changing the pipeline name from "file_load_from_filesystem" to "metadata_extraction_pipeline" better represents the actual purpose of this pipeline, which primarily extracts metadata from files rather than just loading them.


122-122: Improved code readability

Adding this blank line improves code readability by properly separating the permission-giving operations from the return statement.

cognee/modules/pipelines/operations/log_pipeline_run_start.py (2)

8-8: Function signature updated to include pipeline_name parameter

The addition of the pipeline_name parameter aligns with the PR objective of adding pipeline name tracking to the system. This change complements the database model updates mentioned in the PR summary.


20-20: Pipeline name properly stored in PipelineRun model

The pipeline_name parameter is correctly passed to the PipelineRun constructor, ensuring the pipeline name gets stored in the database.

cognee/modules/pipelines/operations/log_pipeline_run_error.py (3)

1-1: Removed unused import

Good cleanup by removing the unused uuid4 import, maintaining code cleanliness.


9-15: Updated function signature with pipeline_name parameter

The error logging function has been properly updated to include the pipeline_name parameter, maintaining consistency with the other pipeline logging functions.


25-25: Pipeline name properly included in error logs

The pipeline_name is correctly passed to the PipelineRun constructor, ensuring error logs contain the pipeline name for better traceability.

cognee/modules/pipelines/operations/log_pipeline_run_complete.py (3)

1-1: Removed unused import

Removing the unused uuid4 import improves code cleanliness.


9-9: Added pipeline_name parameter for completion logging

The completion logging function has been properly updated to include the pipeline_name parameter, completing the consistent implementation across all pipeline logging functions.


20-20: Pipeline name included in completion logs

The pipeline_name is correctly passed to the PipelineRun constructor for completion logs, ensuring consistent tracking throughout the pipeline lifecycle.

cognee/modules/pipelines/operations/run_tasks.py (3)

280-280: Add pipeline_name logging looks good.

This line ensures that the pipeline name is logged from the start of the process, which improves traceability. No issues found with this addition.


289-291: Verify the argument passed to run_tasks_with_telemetry.

Although these lines correctly finalize the pipeline run with the pipeline name, please check line 286 where run_tasks_with_telemetry is called with pipeline_id instead of pipeline_name. This may be an unintentional mismatch.

Would you like to confirm usage in line 286 with a quick repository search to ensure consistency?


294-296: Properly capturing pipeline_name on error.

Including pipeline_name in the error path helps diagnose issues quickly. The logic here is consistent with the rest of the code.

cognee/api/v1/add/add.py (7)

1-5: Updated imports appear correct.

These changes streamline the module references, and there are no apparent issues.


12-12: UUID import for pipeline construction.

Importing uuid5 and NAMESPACE_OID is appropriate for generating consistent dataset or pipeline identifiers.


16-16: Updated type hints look good.

Using lowercase list[...] is consistent with modern Python typing conventions.


20-20: Comment clarifies database creation.

This comment improves readability and communicates intent for setting up databases.


39-39: Task list definition is concise and clear.

Creating tasks for directory resolution and ingestion is straightforward and maintainable.


41-41: Generating dataset_id with uuid5.

Using dataset name to derive a stable UUID is a solid approach to maintain consistent IDs.


42-43: Invoking run_tasks with a custom pipeline_name.

Passing "add_pipeline" as the pipeline name clearly reflects the operation's nature. No concerns identified.

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Actionable comments posted: 1

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@borisarzentar borisarzentar merged commit daed8d5 into dev Mar 29, 2025
41 of 42 checks passed
@borisarzentar borisarzentar deleted the fix/code-cleanup-and-logging branch March 29, 2025 13:55
@coderabbitai coderabbitai bot mentioned this pull request May 15, 2025
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