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base repository: snakemake/snakemake
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base: v9.7.1
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head repository: snakemake/snakemake
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compare: v9.8.0
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  • 4 commits
  • 8 files changed
  • 4 contributors

Commits on Jul 7, 2025

  1. feat: add --no-temp flag synonymous to --notemp (#3632)

    This PR adds a `--no-temp` flag, synonymous to `--notemp`. This resolves
    #3618.
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [x] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [x] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    
    
    <!-- This is an auto-generated comment: release notes by coderabbit.ai
    -->
    
    ## Summary by CodeRabbit
    
    - **New Features**
    - Added support for the `--no-temp` command-line flag as an alias for
    ignoring temporary files in workflows.
    
    - **Tests**
    - Introduced a new workflow and test to verify correct handling of the
    `--no-temp` flag.
    
    <!-- end of auto-generated comment: release notes by coderabbit.ai -->
    nikostr authored Jul 7, 2025
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Commits on Jul 10, 2025

  1. fix: fix exception when joining rule basedir to script or conda env p…

    …ath (#3668)
    
    ### Description
    
    <!--Add a description of your PR here-->
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [x] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [x] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    johanneskoester authored Jul 10, 2025
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  2. docs: Update pixi setup section of tutorial (#3664)

    This pull request includes a minor update to the
    `docs/tutorial/setup.rst` file. The change clarifies that users need to
    open a new terminal window to invoke the `pixi` command after
    installation.
    
    
    <!-- This is an auto-generated comment: release notes by coderabbit.ai
    -->
    
    ## Summary by CodeRabbit
    
    * **Documentation**
    * Clarified that a new terminal window must be opened after installation
    for the `pixi` command to become available.
    
    <!-- end of auto-generated comment: release notes by coderabbit.ai -->
    fxwiegand authored Jul 10, 2025
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  3. chore(main): release 9.8.0 (#3662)

    🤖 I have created a release *beep* *boop*
    ---
    
    
    ##
    [9.8.0](v9.7.1...v9.8.0)
    (2025-07-10)
    
    
    ### Features
    
    * add `--no-temp` flag synonymous to `--notemp`
    ([#3632](#3632))
    ([c775634](c775634))
    
    
    ### Bug Fixes
    
    * fix exception when joining rule basedir to script or conda env path
    ([#3668](#3668))
    ([347420c](347420c))
    
    
    ### Documentation
    
    * Update pixi setup section of tutorial
    ([#3664](#3664))
    ([104203b](104203b))
    
    ---
    This PR was generated with [Release
    Please](https://github.com/googleapis/release-please). See
    [documentation](https://github.com/googleapis/release-please#release-please).
    snakemake-bot authored Jul 10, 2025
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