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I'm starting to regularly analyze samples multiplexed with HTOs a la Stoeckius et al and multimodal CITE-seq ADTs. I have some rough ports of Seurat's HTODemux and some other functionality.
Is anyone else analyzing these kinds of experiments using scanpy and is there interest to bring functionality to do so into the main scanpy branch?
gokceneraslan, timrandg, ivirshup, hisplan, cc36 and 3 moretimrandg and stefanpeidli