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@schumacherlab

Schumacher Lab

We use a technology-based approach to understand how our T cells recognize cancer.

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  1. TCRvdb TCRvdb Public

    TCR validated database

    39

  2. STAPLER STAPLER Public

    STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.

    Python 28 2

  3. TCRbridge TCRbridge Public

    TCRbridge predicts TCR-pMHC reactivity from AlphaFold3 output.

    Python 6

  4. TCRtoolbox TCRtoolbox Public

    3

  5. ONT-TCRconsensus ONT-TCRconsensus Public

    ONT-TCRconsensus creates and counts high accuracy full-length unique TCR molecule consensus sequences.

    Python 2

  6. neolution-prep neolution-prep Public

    Collection of tools to (1) prepare input for neolution-live pipeline, (2) analyse variant calls & antigen predictions, (3) prepare peptide orders

    R 1

Repositories

Showing 9 of 9 repositories
  • TCRbridge Public

    TCRbridge predicts TCR-pMHC reactivity from AlphaFold3 output.

    schumacherlab/TCRbridge’s past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Jul 10, 2025
  • TCRvdb Public

    TCR validated database

    schumacherlab/TCRvdb’s past year of commit activity
    39 0 0 0 Updated May 5, 2025
  • ONT-TCRconsensus Public

    ONT-TCRconsensus creates and counts high accuracy full-length unique TCR molecule consensus sequences.

    schumacherlab/ONT-TCRconsensus’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Apr 29, 2025
  • schumacherlab_publications_code Public

    This repository includes code corresponding to publications of the schumacherlab.

    schumacherlab/schumacherlab_publications_code’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 28, 2025
  • STAPLER Public

    STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.

    schumacherlab/STAPLER’s past year of commit activity
    Python 28 Apache-2.0 2 1 1 Updated Apr 22, 2025
  • TCRtoolbox Public
    schumacherlab/TCRtoolbox’s past year of commit activity
    3 0 0 0 Updated Apr 22, 2025
  • neolution-prep Public

    Collection of tools to (1) prepare input for neolution-live pipeline, (2) analyse variant calls & antigen predictions, (3) prepare peptide orders

    schumacherlab/neolution-prep’s past year of commit activity
    R 1 0 0 0 Updated Sep 28, 2019
  • neolution-live Public

    Pipeline for the prediction of neo-antigens

    schumacherlab/neolution-live’s past year of commit activity
    R 0 0 0 0 Updated Jan 21, 2019
  • varcontext Public

    Perl tool to generate tumor amino acid transcript sequences from (1) variant calls & (2) fusion calls; also infers nonsense-mediated decay status

    schumacherlab/varcontext’s past year of commit activity
    Perl 0 0 0 0 Updated Jun 14, 2018

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