Lcmodel integration #323
Merged
Lcmodel integration #323
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
A large commit containing the first batch of changes to accommodate LCModel fitting. This includes updates to the control file writing, re-import of the modeling results, and visualization. For now, these functions only work with un-edited data. Visualization works for the PDF output, but not for the GUI yet.
New functions to provide, read and write custom LCModel control files.
- updated downstream modules to work with lcmodel - updated GUI to work with lcmodel
- removed metabolite combinations from stack plot - ensured full GUI functionality - automated platform check and font picker
Adding an if-statement to intercept cases where no basis set was formally specified in the job file (for use with special LCModel-sptype-settings like lipid-8, which don't require a basis set).
- added platform extraction to check for LCM binaries - updated ver number for release - avoided accidental nii removal
Added win_10 LCModel binaries
-Added macos catalina LCModel binaries
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Other changes: