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-Added new plot functions for processed and fitted data

  • Mask function for fitting
  • data/list loader update to support arbitrary numbers

HJZollner and others added 30 commits February 5, 2021 15:27
-added abolute value option
-Added right relaxatio lookups for metabolite combinations
-Added external nii viever to gui
- File chekc is performed during the start up of the GUI
- re-integrated Philips MEGA basis sets for GABA/GSH, they were overwritten during the PE editing upload
- Removed message from osp_detDataType during the GUI start up
- fixes soft constraint bug where not all soft constraints were applied
- moved ore-reference step into function
- create all plot function
- created y axis scale function
- fixed bug related to the name change of the Widgets Toolbox
- Cleaned up the QM calculation for unedited, MEGA, and Multiplexed data
- Bug Fix for load window in case the user did supply a short TE water reference, but no reference for eddy current correction
-Added a 30 ms GE PRESS basis set
-Tweaked the HERMES classifier for the GABALac HERMES experiment, bc of weak water suppression
-Added a subspectra alignment based on the L1 norm (sum of the difference spectrum)
-Added a flag to evoke L1norm alignment in the job
-Added options to change the range of FrequencyRestricted registration in the job
-Added a flag to evoke unstable water option in the job
Small fix to squash a bug when DICOM folders in the job file are provided without the file separating character at the end.
Simplify the parsing of the MRS data file extension; add function to load DICOM files without any extension (don't necessarily have to be .dcm or .ima).
-Added .nii.gz reader for all vendors and overlays
- changed standard output format for the voxel masks and segmentation maps to .nii.gz
- replaced .nii files in the examples to reduce file size
-Re-adding gitignore
- Update .gitignore, needed to recache the repostiory to do so
-Re-adding gitignore
_re-cashed and re-added gitignore
-Added MRSI mask for fitting
- New visualization for MRSI data for processed and fitted data
- data/list loading for arbitrary average numbers
@HJZollner HJZollner merged commit e6c8854 into schorschinho:MRSI Mar 16, 2021
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2 participants