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MRSI update #241
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MRSI update #241
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-added abolute value option
abolute_option_for_MinMax
-Added right relaxatio lookups for metabolite combinations -Added external nii viever to gui - File chekc is performed during the start up of the GUI
BugFixAndNiiViewer
- re-integrated Philips MEGA basis sets for GABA/GSH, they were overwritten during the PE editing upload - Removed message from osp_detDataType during the GUI start up
PRIAM_recon Bug Fix No 4
- fixes soft constraint bug where not all soft constraints were applied
SoftConstraint Bug
- moved ore-reference step into function - create all plot function - created y axis scale function - fixed bug related to the name change of the Widgets Toolbox
This reverts commit e01b1b3.
This reverts commit 34292a5.
Clean up code 1
- Cleaned up the QM calculation for unedited, MEGA, and Multiplexed data
Clean Up Redundancies 2
- Bug Fix for load window in case the user did supply a short TE water reference, but no reference for eddy current correction -Added a 30 ms GE PRESS basis set
-Tweaked the HERMES classifier for the GABALac HERMES experiment, bc of weak water suppression
Update_HERMES_Classifier
-Added a subspectra alignment based on the L1 norm (sum of the difference spectrum) -Added a flag to evoke L1norm alignment in the job -Added options to change the range of FrequencyRestricted registration in the job -Added a flag to evoke unstable water option in the job
Adding L1Norm subspec alignment
Small fix to squash a bug when DICOM folders in the job file are provided without the file separating character at the end.
Simplify the parsing of the MRS data file extension; add function to load DICOM files without any extension (don't necessarily have to be .dcm or .ima).
-Added .nii.gz reader for all vendors and overlays - changed standard output format for the voxel masks and segmentation maps to .nii.gz - replaced .nii files in the examples to reduce file size
Adding .nii.gz readability
-Re-adding gitignore
- Update .gitignore, needed to recache the repostiory to do so
Update .gitignore
-Re-adding gitignore
_re-cashed and re-added gitignore
-Added MRSI mask for fitting - New visualization for MRSI data for processed and fitted data - data/list loading for arbitrary average numbers
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-Added new plot functions for processed and fitted data