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Upgrade NumPy to 1.20.3, SciPy 1.6.3, networkx 2.5.1 #31008

@mkoeppe

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@mkoeppe

The upgrade to 1.20.x https://numpy.org/devdocs/release/1.20.0-notes.html require dropping support for Python 3.6

Depends on #31860

CC: @slel @kiwifb

Component: packages: standard

Author: Antonio Rojas, Matthias Koeppe

Branch/Commit: 02f6848

Reviewer: Dima Pasechnik

Issue created by migration from https://trac.sagemath.org/ticket/31008

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