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Upgrade pybind11, docutils and other packages #34795

@mkoeppe

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@mkoeppe

The pybind11 upgrade brings full support for python 3.11

The docutils upgrade avoids deprecation warnings with python 3.11

CC: @dimpase @kwankyu @vbraun

Component: packages: standard

Author: Matthias Koeppe

Branch/Commit: 3666918

Reviewer: Dima Pasechnik

Issue created by migration from https://trac.sagemath.org/ticket/34795

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