Skip to content

Rotate circular contigs in standalone unicycler_polish? #239

@bjreisman

Description

@bjreisman

Thanks for your work on this software. I like using the standalone unicyclcer_polish module to polish assemblies generated using long-read assemblers. I noticed in the unicycler documentation that the full unicycler pipeline will rotate circular contigs between rounds of polishing (if I'm reading it correctly). Watching the unicycler_polish log, it doesn't appear that circular contigs are rotated in the standalone module. Is there a way to get the standalone module to recognize contigs as circular and rotate them as in the full pipeline? Alternatively, it would be great to be able to set a flag to rotate all/some contigs between polishing rounds.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions