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calcProteinInteractions() throws NumPy UFuncTypeError in ProDy 2.5.0

Status: Open.

#2142 In prody/ProDy;

· HaleHasdemir opened on Jul 11, 2025

Problem with calcADPAxes

Status: Open.

#1975 In prody/ProDy;

· karolamik13 opened on Oct 15, 2024

ImportError While Using the ProDy Interface in NMWizard

Status: Open.

#1961 In prody/ProDy;

· DaddyDaddyFish opened on Sep 19, 2024

searchPfam fails to parse XML

Status: Open.

#1933 In prody/ProDy;

· NicholasMcCarthy opened on Aug 12, 2024

addMissingAtoms PDBFixer fails with InSty/WatFinder tutorial file

Status: Open.

#1866 In prody/ProDy;

· jamesmkrieger opened on Apr 16, 2024

error on tutorial Evolution of sequence, structure and dynamics with Evol and SignDy

Status: Open.

#1841 In prody/ProDy;

· Armanda87 opened on Mar 13, 2024

showOccupancies should support atoms kwarg or extract them from ensemble

Status: Open.

#1590 In prody/ProDy;

· jamesmkrieger opened on Sep 19, 2022

NMWiz connected chains

Status: Open.

#1431 In prody/ProDy;

· dim-99 opened on Dec 8, 2021

Is there a way to disable logger output in notebook?

Status: Open.

#1401 In prody/ProDy;

· zllion opened on Aug 3, 2021

System size limitation in writeNMD and/or NMWiz

Status: Open.

#1346 In prody/ProDy;

· cgseitz opened on Mar 26, 2021