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Merged
merged 21 commits into from
Sep 7, 2023
Merged

ColabDesign onboarded #637

merged 21 commits into from
Sep 7, 2023

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acashmoney
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Summary

Use of _colabdesign-dev.json functional

Example usage

./plex init -t tools/colabdesign/_colabdesign-dev.json -i '{"protein": ["tools/colabdesign/6vja_stripped.pdb"], "config": ["tools/colabdesign/config.yaml"]}' --scatteringMethod=crossProduct

Plex version (v0.10.3) up to date.
Pinned IO JSON CID: Qma3xLAyuEcpo3CCiNaYBQMj3WGppBx65NqmxwRjvwHc5A

./plex run -i Qma3xLAyuEcpo3CCiNaYBQMj3WGppBx65NqmxwRjvwHc5A -m 30 -a test
Plex version (v0.10.3) up to date.
Created working directory:  /Users/aakaash/Desktop/code/OPENLAB/plex/jobs/5402eebe-a3db-440e-a876-e95e62446b94
Initialized IO file at:  /Users/aakaash/Desktop/code/OPENLAB/plex/jobs/5402eebe-a3db-440e-a876-e95e62446b94/io.json
Processing IO Entries
Starting to process IO entry 0
Job running...
Bacalhau job id: a908f3aa-2c26-417b-89ed-cd9c5133e100
////__🌱__////
Computing default go-libp2p Resource Manager limits based on:
    - 'Swarm.ResourceMgr.MaxMemory': "8.6 GB"
    - 'Swarm.ResourceMgr.MaxFileDescriptors': 30720

Applying any user-supplied overrides on top.
Run 'ipfs swarm limit all' to see the resulting limits.

Success processing IO entry 0
Finished processing, results written to /Users/aakaash/Desktop/code/OPENLAB/plex/jobs/5402eebe-a3db-440e-a876-e95e62446b94/io.json
Completed IO JSON CID: QmXJ8TseJo7XLGhfYKtnSBe1QYUyoYNV5bnRB7KfmcVfg2

NiklasTR and others added 21 commits September 1, 2023 19:34
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vercel bot commented Sep 7, 2023

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docs ⬜️ Ignored (Inspect) Sep 7, 2023 5:28pm

@acashmoney acashmoney temporarily deployed to ci September 7, 2023 17:29 — with GitHub Actions Inactive
@acashmoney acashmoney requested a review from NiklasTR September 7, 2023 17:29
@NiklasTR NiklasTR merged commit 2a66664 into main Sep 7, 2023
@NiklasTR NiklasTR deleted the add_colabdesign_frfr branch September 7, 2023 17:30
NiklasTR
NiklasTR reviewed Sep 7, 2023
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lgtm

@acashmoney acashmoney mentioned this pull request Sep 7, 2023
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@acashmoney @NiklasTR