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johnppederson/README.md

πŸ‘‹ Hi there, I'm John!

I'm a computational chemistry PhD student at Georgia Tech studying reactions at solid/liquid interfaces. This github page hosts projects related to my research.

πŸ’» Projects

Highlights

PyDFT-QMMM implements QM/MM dynamics for several different PBC QM/MM approaches, including the QM/MM/Cutoff and QM/MM/PME methods. I develop and maintain this repository to aid in my research!

helPME-py is a refactorization of the helPME repository focused on providing an efficient and modular Python utility for performing Particle Mesh Ewald calculations. I performed the refactorization and I maintain this repository to aid in my research!

Psi4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of molecular properties. I contribute features for including external potentials in calculations!

πŸ“š Publications

Highlights

PyDFT-QMMM: A modular, extensible software framework for DFT-based QM/MM molecular dynamics

DFT-based QM/MM with particle-mesh Ewald for direct, long-range electrostatic embedding

Full Publication Record

GoogleScholar ORCID

πŸ› οΈ Tools and Skills

Languages

Python C C++ R JS Tcl

Libraries

NumPy SciPy Psi4 OpenMM Pandas MDA Numba Plotly ScikitLearn PyVista

Tools

CMake Git OpenMP Docker LaTeX OpenFOAM ParaView Gmsh AspenPlus VMD GoogleColab

Design

Inkscape Gimp Blender

πŸ“ˆ GitHub Stats

Summary

🌐 Connect

LinkedIn

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