This package is used to benchmark and interactively explore the results of metagenomic binning given a dataset. This is the Julia backend of the command-line tool BinBencher.

• Install Julia (ideally using Juliaup: https://github.com/JuliaLang/juliaup) or from the official website www.julialang.org
• Use the Julia package manager to install this package: ] add BinBencherBackend

Basic usage:

using BinBencherBackend
ref = Reference("files/ref.json")
bins = Binning("files/clusters.tsv", ref)
print_matrix(bins)

For more, see the documentation

• CAMI2 toy human microbiome short read gold standard assembly: https://zenodo.org/records/15083711