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Hi,
I have reconstructed a tree using the pre-release IQ-TREE version 2.3.3.
I need to use this version since the constrained tree search and ModelFinder issue has just been fixed.
However, I got an error in the last line of the following.
Computing bootstrap consensus tree...
Reading input file NIM1K.trimal.splits.nex...
204 taxa and 412 splits.
Consensus tree written to NIM1K.trimal.contree
Reading input trees file NIM1K.trimal.contree
Log-likelihood of consensus tree: -33638.537
ERROR: Expecting ')', but found '/' instead (line 1 column 93)
Here is the code I used.
iqtree2 -s NIM1K.trimal -g NIM1K.const.sp_tree.treefile -m MFP -B 1000 -alrt 1000 -T 1 -mem 16G
Since there is no '/' in my input files, I don't know what exactly happened.
However, I cannot get the bootstrap and SH-Alrt values from the resulting tree (.treefile
).
Could you figure out this issue?
Thank you in advance!
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