exp run: doesn't work with submodule as dependency #7186
Description
Bug Report
Description
dvc exp run fails and dvc repro runs successfully when a cmd is executed from inside of a submodule and the submodule is included as a dependency.
Reproduce
Set Up:
mkdir test
cd test
mkdir submodule
cd submodule
git init
echo "cp ../data/a.txt ../models/b.txt" > run.sh
git add run.sh
git commit -m "initial commit"
cd ..
mkdir main
cd main
git init
dvc init
dvc config cache.type=hardlink,symlink,copy
git submodule add ../submodule src
mkdir data
echo "test" > data/a.txt
mkdir models
dvc stage add -n cp -w src -d ../src -d ../data/a.txt -o ../models/b.txt bash run.sh
dvc repro
git add .
git commit -m "initial commit"This works
dvc repro -f
This fails:
dvc exp run -f
This also fails:
dvc exp run -f --temp
Expected
dvc repro and dvc exp run run and succeed similarly.
Environment information
Output of dvc doctor:
$ dvc doctor
DVC version: 2.9.2 (pip)
---------------------------------
Platform: Python 3.8.10 on Linux-5.11.0-1021-aws-x86_64-with-glibc2.29
Supports:
hdfs (fsspec = 2021.10.1, pyarrow = 5.0.0),
webhdfs (fsspec = 2021.10.1),
http (aiohttp = 3.8.1, aiohttp-retry = 2.4.6),
https (aiohttp = 3.8.1, aiohttp-retry = 2.4.6),
s3 (s3fs = 2021.10.1, boto3 = 1.17.106)
Cache types: hardlink, symlink
Cache directory: lustre on 172.16.38.30@tcp:/skl3jbmv
Caches: local
Remotes: s3
Workspace directory: lustre on 172.16.38.30@tcp:/skl3jbmv
Repo: dvc, gitAdditional Information (if any):
There's an error in the verbose output that indicates
ERROR: unexpected error - invalid data in index - invalid entryMetadata
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