feat!: Remove higlass.fuse
#175
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description
This PR removes the
higlass.fuse
-based API. Similar tohiglass.server
, the module introduced inconsistencies and maintenance challenges.Emulation of remote files through FUSE could be a standalone module of it's own and managed externally from
higlass-python
. Here, it just added a lot of complexity and it's not clear to what benefit nowthat filehandle-like interfaces provide a more reliable alternative.
What was changed in this pull request?
higlass.fuse
module and related dependencies.higlass.fuse
in the codebase.Checklist
fix:
orfeat:
to help organize auto-generated notes.