The goal of miaSimShiny is to facilitate the use of miaSim (an R package for microbial community simulations) in a local shiny app.
You can install miaSimShiny and its dependencies like so:
# 1. install the latest version of miaSim
if (!require("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("microbiome/miaSim")
# 2. install miaViz
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miaViz")
# 3. install miaSimShiny
if (!require("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("gaoyu19920914/miaSimShiny")This is a basic example which shows you how to run the app:
library(miaSimShiny)
## run the shiny app for miaSim
miaSimShiny::run_app()Follow this link to try the online version, which is limited in usage and function, and is outdated.