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Hi fmalmeida,
i am experiencing the following error with the new version.
please help me fix the error.
below is the error:
`Command output:
(empty)
Command error:
Traceback (most recent call last):
File "/opt/conda/envs/falmeida-py/bin/falmeida-py", line 33, in
sys.exit(load_entry_point('falmeida-py==1.2.2', 'console_scripts', 'falmeida-py')())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/falmeida-py/lib/python3.11/site-packages/falmeida_py/main.py", line 212, in main
bacannot2json(args['--input'], args['--output'], args['--print'])
File "/opt/conda/envs/falmeida-py/lib/python3.11/site-packages/falmeida_py/bacannot2json.py", line 102, in bacannot2json
general_stats( bacannot_summary )
File "/opt/conda/envs/falmeida-py/lib/python3.11/site-packages/falmeida_py/general_stats_function.py", line 43, in general_stats
bacannot_summary[sample]['general_annotation']['tmrna'] = general_results['tmRNA']
~~~~~~~~~~~~~~~^^^^^^^^^
KeyError: 'tmRNA'
Work dir:
/home/cdc-bioinfo/work/39/0a451614ccf1dfc0fe33a572b47d4d
Tip: you can replicate the issue by changing to the process work dir and entering the command bash .command.run
help needed.
thank you,
Javaria Ashraf
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