Describe the bug
Hi Felipe Marques de Almeida,
I am running the pipeline bacannot for a large number of bacterial genome. For some sequences, the integron_Finder_GFF is failing and causing the pipeline to terminate.
the error is following
"Error executing process > 'BACANNOT:INTEGRON_FINDER_2GFF (vibrio9)'

Caused by:
Process BACANNOT:INTEGRON_FINDER_2GFF (vibrio9) terminated with an error exit status (255)

Command executed:

convert to gff if available

touch vibrio9_integrons.gff ;
for gbk in $(ls *.gbk) ; do
conda run -n perl bp_genbank2gff3 $gbk -o - | grep 'integron_id' | sed 's|ID=.*integron_id=|ID=|g' | sed 's/GenBank/Integron_Finder/g' >> vibrio9_integrons.gff
done

Command exit status:
255

Command output:
(empty)

Command error:

------------- EXCEPTION -------------
MSG: start must be set or is zero:
STACK Bio::SeqFeature::Tools::IDHandler::generate_unique_persistent_id /opt/conda/envs/perl/lib/perl5/site_perl/Bio/SeqFeature/Tools/IDHandler.pm:266
STACK main::add_generic_id /opt/conda/envs/perl/bin/bp_genbank2gff3:964
STACK toplevel /opt/conda/envs/perl/bin/bp_genbank2gff3:563
"
Please help me solve this issue.