Update Python dependencies, uv and liccheck exceptions
#1002
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #1002 +/- ##
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- Coverage 74.95% 74.84% -0.11%
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Files 67 67
Lines 4659 4631 -28
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- Hits 3492 3466 -26
+ Misses 1167 1165 -2 🚀 New features to boost your workflow:
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- Remove liccheck exception for NewareNDA now that it has an spdx license - Allow PSF-2.0 libraries - Add exception for regex subdep
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uv.lock with latest dependenciesuv and liccheck exceptions
ml-evs
reviewed
Jul 31, 2025
.docker/server_dockerfile
Outdated
| @@ -1,4 +1,6 @@ | |||
| # syntax=docker/dockerfile:1 | |||
| ARG UV_VERSION="0.8.4" | |||
| FROM ghcr.io/astral-sh/uv:${UV_VERSION} as uv_image | |||
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| FROM ghcr.io/astral-sh/uv:${UV_VERSION} as uv_image | |
| FROM ghcr.io/astral-sh/uv:${UV_VERSION} AS uv_image |
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ml-evs
approved these changes
Jul 31, 2025
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Using CPython 3.10.18 interpreter at: /opt/hostedtoolcache/Python/3.10.18/x64/bin/python3
Updating https://github.com/datalab-org/datalab-app-plugin-insitu.git (v0.2.0-rc.1)
Updated https://github.com/datalab-org/datalab-app-plugin-insitu.git (df8b5d691f76fb08a2d720d0693e8ad7d43930f9)
Resolved 166 packages in 14.05s
Updated aiohappyeyeballs v2.4.3 -> v2.6.1
Updated aiohttp v3.10.10 -> v3.12.15
Updated aiosignal v1.3.1 -> v1.4.0
Updated anthropic v0.37.1 -> v0.60.0
Updated anyio v4.6.2.post1 -> v4.9.0
Removed appdirs v1.4.4
Updated attrs v24.2.0 -> v25.3.0
Updated babel v2.16.0 -> v2.17.0
Updated backrefs v5.8 -> v5.9
Updated bracex v2.5.post1 -> v2.6
Updated certifi v2024.8.30 -> v2025.7.14
Updated charset-normalizer v3.4.0 -> v3.4.2
Updated click v8.1.7 -> v8.2.1
Updated contourpy v1.3.0 -> v1.3.2, v1.3.3
Updated coverage v7.6.4 -> v7.10.1
Updated datalab-org-galvani v0.5.1 -> v0.5.2
Updated distlib v0.3.9 -> v0.4.0
Updated exceptiongroup v1.2.2 -> v1.3.0
Updated filelock v3.16.1 -> v3.18.0
Updated flask-compress v1.17 -> v1.18
Updated flask-cors v6.0.0 -> v6.0.1
Updated flexparser v0.3.1 -> v0.4
Updated fonttools v4.54.1 -> v4.59.0
Updated frozenlist v1.5.0 -> v1.7.0
Updated fsspec v2024.10.0 -> v2025.7.0
Updated greenlet v3.1.1 -> v3.2.3
Updated griffe v1.7.3 -> v1.9.0
Updated h11 v0.14.0 -> v0.16.0
Added hf-xet v1.1.5
Updated httpcore v1.0.6 -> v1.0.9
Updated huggingface-hub v0.26.2 -> v0.34.3
Updated identify v2.6.1 -> v2.6.12
Updated iniconfig v2.0.0 -> v2.1.0
Updated jiter v0.6.1 -> v0.10.0
Updated kiwisolver v1.4.7 -> v1.4.8
Updated langchain v0.2.16 -> v0.2.17
Updated langchain-core v0.2.41 -> v0.2.43
Updated langsmith v0.1.137 -> v0.1.147
Updated lmfit v1.3.3 -> v1.3.4
Updated markdown v3.7 -> v3.8.2
Updated mkdocs-autorefs v1.4.1 -> v1.4.2
Updated mkdocs-awesome-pages-plugin v2.9.3 -> v2.10.1
Updated mkdocs-material v9.6.14 -> v9.6.16
Updated mkdocstrings v0.29.1 -> v0.30.0
Updated mkdocstrings-python v1.16.10 -> v1.16.12
Updated mongomock v4.2.0.post1 -> v4.3.0
Updated multidict v6.1.0 -> v6.6.3
Updated newarenda v2025.5.15 -> v2025.6.2
Updated oauthlib v3.2.2 -> v3.3.1
Updated openai v1.52.2 -> v1.97.1
Updated orjson v3.10.10 -> v3.11.1
Updated packaging v24.1 -> v24.2
Updated pandas v2.2.3 -> v2.3.1
Updated pillow v11.0.0 -> v11.3.0
Updated pint v0.24.3 -> v0.24.4
Updated platformdirs v4.3.6 -> v4.3.8
Updated pluggy v1.5.0 -> v1.6.0
Updated pre-commit v4.0.1 -> v4.2.0
Updated propcache v0.2.0 -> v0.3.2
Updated pybaselines v1.1.0 -> v1.2.0
Updated pygments v2.18.0 -> v2.19.2
Updated pyjwt v2.9.0 -> v2.10.1
Updated pymdown-extensions v10.12 -> v10.16.1
Updated pymongo v4.13.0 -> v4.13.2
Updated pyparsing v3.2.0 -> v3.2.3
Updated pytest v8.3.3 -> v8.4.1
Updated python-calamine v0.2.3 -> v0.4.0
Updated python-dotenv v1.0.1 -> v1.1.1
Updated pytz v2024.2 -> v2025.2
Updated pyyaml-env-tag v0.1 -> v1.1
Added pyzstd v0.17.0
Updated regex v2024.9.11 -> v2025.7.31
Updated requests v2.32.3 -> v2.32.4
Updated safetensors v0.4.5 -> v0.5.3
Updated scipy v1.15.3 -> v1.15.3, v1.16.1
Updated setuptools v75.3.0 -> v80.9.0
Updated six v1.16.0 -> v1.17.0
Updated sqlalchemy v2.0.36 -> v2.0.42
Updated tiktoken v0.8.0 -> v0.9.0
Updated tokenizers v0.20.1 -> v0.21.4
Updated tomli v2.0.2 -> v2.2.1
Updated tornado v6.4.1 -> v6.5.1
Updated tqdm v4.66.6 -> v4.67.1
Updated transformers v4.46.1 -> v4.54.1
Updated typing-extensions v4.12.2 -> v4.14.1
Updated tzdata v2024.2 -> v2025.2
Updated urllib3 v2.2.3 -> v2.5.0
Updated urlobject v2.4.3 -> v3.0.0
Updated virtualenv v20.27.1 -> v20.32.0
Updated watchdog v5.0.3 -> v6.0.0
Updated wcmatch v10.0 -> v10.1
Updated xlrd v2.0.1 -> v2.0.2
Updated xlsxwriter v3.2.0 -> v3.2.5
Updated yarl v1.17.0 -> v1.20.1
Removed zstandard v0.23.0