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Description
Tried to build sagemath-standard
to reproduce a possible tool chain failure. Got the build failure as:
# emerge -av1 sagemath-standard
# emerge -av1 sagemath-standard
...
[ebuild N ] sci-mathematics/sagemath-standard-10.3::sage-on-gentoo USE="X doc jmol -debug -latex -test" PYTHON_TARGETS="python3_11 -python3_10 -python3_12" 0 KiB
[ebuild N ] sci-mathematics/sage-doc-10.3::sage-on-gentoo USE="-doc-pdf" L10N="-ca -de -es -fr -hu -it -ja -pt -ru -tr" 0 KiB
...
************************************************************************
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 429, in <module>
sys.exit(main())
^^^^^^
File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 425, in main
return func(args)
^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 215, in build_wheel
print(build_wheel_impl(args, args.wheel_dir), file=out)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 207, in build_wheel_impl
wheel_name = backend.build_wheel(str(wheel_dir), args.config_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 410, in build_wheel
return self._build_with_temp_dir(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 395, in _build_with_temp_dir
self.run_setup()
File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 311, in run_setup
exec(code, locals())
File "<string>", line 105, in <module>
File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 104, in setup
return distutils.core.setup(**attrs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 184, in setup
return run_commands(dist)
^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 200, in run_commands
dist.run_commands()
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/lib/python3.11/site-packages/wheel/bdist_wheel.py", line 368, in run
self.run_command("build")
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 132, in run
self.run_command(cmd_name)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/lib/python3.11/site-packages/sage_setup/command/sage_build_ext.py", line 25, in run
self.run_command('build_cython')
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/lib/python3.11/site-packages/sage_setup/command/sage_build_cython.py", line 220, in run
extensions = cythonize(
^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/Cython/Build/Dependencies.py", line 1150, in cythonize
result.get(99999) # seconds
^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/multiprocessing/pool.py", line 774, in get
raise self._value
File "/usr/lib/python3.11/multiprocessing/pool.py", line 540, in _handle_tasks
put(task)
File "/usr/lib/python3.11/multiprocessing/connection.py", line 206, in send
self._send_bytes(_ForkingPickler.dumps(obj))
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/multiprocessing/reduction.py", line 51, in dumps
cls(buf, protocol).dump(obj)
AttributeError: Can't pickle local object '_prepare_extension_detection.<locals>.<lambda>'
************************************************************************
Error building the Sage library
************************************************************************
* ERROR: sci-mathematics/sagemath-standard-10.3::sage-on-gentoo failed (compile phase):
* Wheel build failed
*
* Call stack:
* ebuild.sh, line 136: Called src_compile
* environment, line 4476: Called distutils-r1_src_compile
* environment, line 1978: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
* environment, line 731: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 4053: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 3491: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 3489: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 1294: Called distutils-r1_run_phase 'distutils-r1_python_compile'
* environment, line 1960: Called distutils-r1_python_compile
* environment, line 1776: Called distutils_pep517_install '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/work/sagemath-standard-10.3-python3_11/install'
* environment, line 2345: Called die
* The specific snippet of code:
* local wheel=$("${cmd[@]}" 3>&1 1>&2 || die "Wheel build failed");
*
* If you need support, post the output of `emerge --info '=sci-mathematics/sagemath-standard-10.3::sage-on-gentoo'`,
* the complete build log and the output of `emerge -pqv '=sci-mathematics/sagemath-standard-10.3::sage-on-gentoo'`.
* The complete build log is located at '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/temp/build.log'.
* The ebuild environment file is located at '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/temp/environment'.
* Working directory: '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/work/sagemath-standard-10.3'
* S: '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/work/sagemath-standard-10.3'
>>> Failed to emerge sci-mathematics/sagemath-standard-10.3
* Messages for package sci-mathematics/sagemath-standard-10.3:
* ERROR: sci-mathematics/sagemath-standard-10.3::sage-on-gentoo failed (compile phase):
* Wheel build failed
*
* Call stack:
* ebuild.sh, line 136: Called src_compile
* environment, line 4476: Called distutils-r1_src_compile
* environment, line 1978: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
* environment, line 731: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 4053: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 3491: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 3489: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
* environment, line 1294: Called distutils-r1_run_phase 'distutils-r1_python_compile'
* environment, line 1960: Called distutils-r1_python_compile
* environment, line 1776: Called distutils_pep517_install '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/work/sagemath-standard-10.3-python3_11/install'
* environment, line 2345: Called die
* The specific snippet of code:
* local wheel=$("${cmd[@]}" 3>&1 1>&2 || die "Wheel build failed");
*
* If you need support, post the output of `emerge --info '=sci-mathematics/sagemath-standard-10.3::sage-on-gentoo'`,
* the complete build log and the output of `emerge -pqv '=sci-mathematics/sagemath-standard-10.3::sage-on-gentoo'`.
* The complete build log is located at '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/temp/build.log'.
* The ebuild environment file is located at '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/temp/environment'.
* Working directory: '/dev/shm/portage/sci-mathematics/sagemath-standard-10.3/work/sagemath-standard-10.3'
# emerge --info
# emerge --info
Portage 3.0.64 (python 3.11.9-final-0, default/linux/amd64/17.1, gcc-13, glibc-2.39-r4, 6.9.0-rc5 x86_64)
=================================================================
System uname: Linux-6.9.0-rc5-x86_64-AMD_Ryzen_9_5950X_16-Core_Processor-with-glibc2.39
KiB Mem: 131848004 total, 17565464 free
KiB Swap: 197770748 total, 195366652 free
Head commit of repository gentoo: f653248b062439bfc6fafabae43cb1b94952ab1d
Head commit of repository nix-guix: c91980e8812b78b0221642f5edaf697d479961ab
Head commit of repository sage-on-gentoo: 1669f0e889ca9951f26aafdd33558d9590cc6618
sh bash 5.2_p26-r3
ld GNU ld (Gentoo 2.41 p5) 2.41.0
ccache version 4.9.1 [disabled]
app-misc/pax-utils: 1.3.7::gentoo
app-shells/bash: 5.2_p26-r3::gentoo
dev-build/autoconf: 2.72-r1::gentoo
dev-build/automake: 1.16.5-r2::gentoo
dev-build/cmake: 3.29.2::gentoo
dev-build/libtool: 2.4.7-r4::gentoo
dev-build/make: 4.4.1-r1::gentoo
dev-build/meson: 1.4.0-r1::gentoo
dev-java/java-config: 2.3.3-r1::gentoo
dev-lang/perl: 5.38.2-r2::gentoo
dev-lang/python: 3.11.9::gentoo, 3.12.3::gentoo
dev-lang/rust: 1.77.1::gentoo
dev-util/ccache: 4.9.1-r1::gentoo
sys-apps/baselayout: 2.15::gentoo
sys-apps/sandbox: 2.38::gentoo
sys-apps/systemd: 254.11::gentoo
sys-devel/binutils: 2.41-r5::gentoo, 2.42-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc: 12.3.1_p20240209::gentoo, 13.2.1_p20240503::gentoo
sys-devel/gcc-config: 2.11::gentoo
sys-devel/llvm: 17.0.6::gentoo, 18.1.5::gentoo
sys-kernel/linux-headers: 6.8-r1::gentoo (virtual/os-headers)
sys-libs/glibc: 2.39-r4::gentoo
Repositories:
gentoo
location: /var/db/repos/gentoo
sync-type: git
sync-uri: https://github.com/gentoo/gentoo.git
priority: -1000
volatile: False
crossdev
location: /co
masters: gentoo
volatile: True
nix-guix
location: /var/db/repos/nix-guix
sync-type: git
sync-uri: https://github.com/trofi/nix-guix-gentoo.git
masters: gentoo
volatile: False
sage-on-gentoo
location: /var/db/repos/sage-on-gentoo
sync-type: git
sync-uri: https://github.com/cschwan/sage-on-gentoo
masters: gentoo
volatile: False
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -fdiagnostics-show-option -frecord-gcc-switches"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/bound/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
LEX="flex"
MAKEOPTS="-j17 -l17"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/dev/shm"
SHELL="/bin/bash"
USE="X acl amd64 bzip2 cli crypt dri fortran gdbm harfbuzz iconv ipv6 libtirpc minizip multilib ncurses nls opengl openmp pam pcre readline seccomp split-usr ssl systemd test-rust text unicode xattr zlib" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
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