merge_tree: bug in checking for subdirectory #4976
Description
Checklist
- I added a descriptive title
- I searched open reports and couldn't find a duplicate
What happened?
$ call conda mambabuild recipe --prefix-length=80 --output-folder=conda_packages -c esrf-bcu -c conda-forge
No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.22
WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.22
Updating build index: C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss\conda_packages
Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Attempting to finalize metadata for bliss
INFO:conda_build.metadata:Attempting to finalize metadata for bliss
Attempting to finalize metadata for bliss
INFO:conda_build.metadata:Attempting to finalize metadata for bliss
Reloading output folder:
C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss\conda_packages
Reloading output folder:
C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss\conda_packages
Reloading output folder:
C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss\conda_packages
BUILD START: ['bliss-1.12.dev0-pyh74a9793_130116.tar.bz2']
Reloading output folder:
C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss\conda_packages
Reloading output folder:
C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss\conda_packages
## Package Plan ##
environment location: C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\conda-bld\bliss_1692732999059\_h_env
The following NEW packages will be INSTALLED:
bzip2: 1.0.8-h8ffe710_4 conda-forge
ca-certificates: 2023.7.22-h56e8100_0 conda-forge
libexpat: 2.5.0-h63175ca_1 conda-forge
libffi: 3.4.2-h8ffe710_5 conda-forge
libsqlite: 3.42.0-hcfcfb64_0 conda-forge
libzlib: 1.2.13-hcfcfb64_5 conda-forge
openssl: 3.1.2-hcfcfb64_0 conda-forge
pip: 23.2.1-pyhd8ed1ab_0 conda-forge
python: 3.11.4-h2628c8c_0_cpython conda-forge
setuptools: 68.1.2-pyhd8ed1ab_0 conda-forge
tk: 8.6.12-h8ffe710_0 conda-forge
tzdata: 2023c-h71feb2d_0 conda-forge
ucrt: 10.0.22621.0-h57928b3_0 conda-forge
vc: 14.3-h64f974e_17 conda-forge
vc14_runtime: 14.36.32532-hfdfe4a8_17 conda-forge
vs2015_runtime: 14.36.32532-h05e6639_17 conda-forge
wheel: 0.41.2-pyhd8ed1ab_0 conda-forge
xz: 5.2.6-h8d14728_0 conda-forge
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Copying C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss to C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\conda-bld\bliss_1692732999059\work\
Traceback (most recent call last):
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Scripts\conda-mambabuild-script.py", line 9, in <module>
sys.exit(main())
^^^^^^
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\boa\cli\mambabuild.py", line 256, in main
call_conda_build(action, config)
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\boa\cli\mambabuild.py", line 228, in call_conda_build
result = api.build(
^^^^^^^^^^
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\conda_build\api.py", line 253, in build
return build_tree(
^^^^^^^^^^^
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\conda_build\build.py", line 3799, in build_tree
packages_from_this = build(
^^^^^^
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\conda_build\build.py", line 2582, in build
try_download(m, no_download_source=False, raise_error=True)
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\conda_build\render.py", line 757, in try_download
source.provide(metadata)
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\conda_build\source.py", line 1100, in provide
copy_into(
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\conda_build\utils.py", line 616, in copy_into
merge_tree(
File "C:\GitLab-Runner\builds\Dx9KqxMZ\0\bliss\bliss-build-env\Lib\site-packages\conda_build\utils.py", line 729, in merge_tree
assert not dst.startswith(src), (
AssertionError: Can't merge/copy source into subdirectory of itself. Please create separate spaces for these things.
src: c:\gitlab-runner\builds\dx9kqxmz\0\bliss\bliss
dst: c:\gitlab-runner\builds\dx9kqxmz\0\bliss\bliss-build-env\conda-bld\bliss_1692732999059\work
Conda Info
active environment : base
active env location : C:\ProgramData\miniconda3
shell level : 1
user config file : C:\WINDOWS\system32\config\systemprofile\.condarc
populated config files : C:\Windows\System32\config\systemprofile\.condarc
conda version : 23.7.2
conda-build version : not installed
python version : 3.10.12.final.0
virtual packages : __archspec=1=x86_64
__win=0=0
base environment : C:\ProgramData\miniconda3 (writable)
conda av data dir : C:\ProgramData\miniconda3\etc\conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/win-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/win-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/msys2/win-64
https://repo.anaconda.com/pkgs/msys2/noarch
package cache : C:\ProgramData\miniconda3\pkgs
C:\WINDOWS\system32\config\systemprofile\.conda\pkgs
C:\WINDOWS\system32\config\systemprofile\AppData\Local\conda\conda\pkgs
envs directories : C:\ProgramData\miniconda3\envs
C:\WINDOWS\system32\config\systemprofile\.conda\envs
C:\WINDOWS\system32\config\systemprofile\AppData\Local\conda\conda\envs
platform : win-64
user-agent : conda/23.7.2 requests/2.29.0 CPython/3.10.12 Windows/10 Windows/10.0.19044
administrator : True
netrc file : None
offline mode : FalseConda Config
==> cmd_line <==
debug: False
json: FalseConda list
# packages in environment at C:\ProgramData\miniconda3:
#
# Name Version Build Channel
boltons 23.0.0 py310haa95532_0 defaults
brotlipy 0.7.0 py310h2bbff1b_1002 defaults
bzip2 1.0.8 he774522_0 defaults
ca-certificates 2023.7.22 h56e8100_0 conda-forge
certifi 2023.7.22 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py310h2bbff1b_3 defaults
charset-normalizer 2.0.4 pyhd3eb1b0_0 defaults
colorama 0.4.6 py310haa95532_0 defaults
conda 23.7.2 py310h5588dad_0 conda-forge
conda-content-trust 0.1.3 py310haa95532_0 defaults
conda-libmamba-solver 23.5.0 py310haa95532_0 defaults
conda-package-handling 2.1.0 py310haa95532_0 defaults
conda-package-streaming 0.8.0 py310haa95532_0 defaults
console_shortcut_miniconda 0.1.1 haa95532_1 defaults
cryptography 39.0.1 py310h21b164f_2 defaults
fmt 9.1.0 h6d14046_0 defaults
idna 3.4 py310haa95532_0 defaults
jsonpatch 1.32 pyhd3eb1b0_0 defaults
jsonpointer 2.1 pyhd3eb1b0_0 defaults
krb5 1.21.2 heb0366b_0 conda-forge
libarchive 3.6.2 hb62f4d4_2 defaults
libcurl 8.2.1 hd5e4a3a_0 conda-forge
libffi 3.4.4 hd77b12b_0 defaults
libiconv 1.16 h2bbff1b_2 defaults
libmamba 1.4.9 ha24f096_0 conda-forge
libmambapy 1.4.9 py310h3fe4c2e_0 conda-forge
libsolv 0.7.24 h12be248_3 conda-forge
libssh2 1.11.0 h7dfc565_0 conda-forge
libxml2 2.10.3 h0ad7f3c_0 defaults
libzlib 1.2.13 hcfcfb64_5 conda-forge
lz4-c 1.9.4 h2bbff1b_0 defaults
mamba 1.4.9 py310hd9d798f_0 conda-forge
menuinst 1.4.19 py310h59b6b97_0 defaults
openssl 3.1.2 hcfcfb64_0 conda-forge
packaging 23.0 py310haa95532_0 defaults
pcre2 10.37 h0ff8eda_1 defaults
pip 23.1.2 py310haa95532_0 defaults
pluggy 1.0.0 py310haa95532_1 defaults
powershell_shortcut_miniconda 0.0.1 haa95532_1 defaults
pybind11-abi 4 hd3eb1b0_1 defaults
pycosat 0.6.4 py310h2bbff1b_0 defaults
pycparser 2.21 pyhd3eb1b0_0 defaults
pyopenssl 23.0.0 py310haa95532_0 defaults
pysocks 1.7.1 py310haa95532_0 defaults
python 3.10.12 he1021f5_0 defaults
python_abi 3.10 2_cp310 conda-forge
reproc 14.2.4 hd77b12b_1 defaults
reproc-cpp 14.2.4 hd77b12b_1 defaults
requests 2.29.0 py310haa95532_0 defaults
ruamel.yaml 0.17.21 py310h2bbff1b_0 defaults
ruamel.yaml.clib 0.2.6 py310h2bbff1b_1 defaults
setuptools 67.8.0 py310haa95532_0 defaults
six 1.16.0 pyhd3eb1b0_1 defaults
sqlite 3.41.2 h2bbff1b_0 defaults
tk 8.6.12 h2bbff1b_0 defaults
toolz 0.12.0 py310haa95532_0 defaults
tqdm 4.65.0 py310h9909e9c_0 defaults
tzdata 2023c h04d1e81_0 defaults
ucrt 10.0.22621.0 h57928b3_0 conda-forge
urllib3 1.26.16 py310haa95532_0 defaults
vc 14.2 h21ff451_1 defaults
vc14_runtime 14.36.32532 hfdfe4a8_17 conda-forge
vs2015_runtime 14.36.32532 h05e6639_17 conda-forge
wheel 0.38.4 py310haa95532_0 defaults
win_inet_pton 1.1.0 py310haa95532_0 defaults
xz 5.4.2 h8cc25b3_0 defaults
yaml-cpp 0.7.0 hd77b12b_1 defaults
zlib 1.2.13 hcfcfb64_5 conda-forge
zstandard 0.19.0 py310h2bbff1b_0 defaults
zstd 1.5.5 hd43e919_0 defaultsAdditional Context
No response