conda run python in it's own activated environment not using proper python #9571
Description
Current Behavior
In conda 4.8.1 and 4.8.0, when using conda run from inside its own activated environment, it does not use the specified environment.
Steps to Reproduce
With the file script.py
import sys
print(sys.path)base ❯ conda run -n env_name python script.py
['/Users/pcosta/miniconda3/envs/env_name/lib/python37.zip', '/Users/pcosta/miniconda3/envs/env_name/lib/python3.7', '/Users/pcosta/miniconda3/envs/env_name/lib/python3.7/lib-dynload', '/Users/pcosta/miniconda3/envs/env_name/lib/python3.7/site-packages']
base ❯ conda activate env_name
env_name ❯ python script.py
['/Users/pcosta/miniconda3/envs/env_name/lib/python37.zip', '/Users/pcosta/miniconda3/envs/env_name/lib/python3.7', '/Users/pcosta/miniconda3/envs/env_name/lib/python3.7/lib-dynload', '/Users/pcosta/miniconda3/envs/env_name/lib/python3.7/site-packages']
env_name ❯ conda run -n env_name python script.py
['/Users/pcosta/miniconda3/lib/python37.zip', '/Users/pcosta/miniconda3/lib/python3.7', '/Users/pcosta/miniconda3/lib/python3.7/lib-dynload', '/Users/pcosta/miniconda3/lib/python3.7/site-packages']Expected Behavior
conda run should always use Python environment specified in argument.
Environment Information
`conda info`
active environment : env_name
active env location : /Users/pcosta/miniconda3/envs/env_name
shell level : 2
user config file : /Users/pcosta/.condarc
populated config files : /Users/pcosta/.condarc
conda version : 4.8.1
conda-build version : not installed
python version : 3.7.3.final.0
virtual packages : __osx=10.14.4
base environment : /Users/pcosta/miniconda3 (writable)
channel URLs : https://conda.anaconda.org/plotly/osx-64
https://conda.anaconda.org/plotly/noarch
https://conda.anaconda.org/conda-forge/osx-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/pcosta/miniconda3/pkgs
/Users/pcosta/.conda/pkgs
envs directories : /Users/pcosta/miniconda3/envs
/Users/pcosta/.conda/envs
platform : osx-64
user-agent : conda/4.8.1 requests/2.22.0 CPython/3.7.3 Darwin/18.5.0 OSX/10.14.4
UID:GID : 1058790558:1165330761
netrc file : None
offline mode : False
`conda config --show-sources`
==> /Users/pcosta/.condarc <==
auto_activate_base: False
ssl_verify: False
proxy_servers:
http: {my_address}
https: {my_address}
channels:
- plotly
- conda-forge
- defaults
`conda list --show-channel-urls`
# packages in environment at /Users/pcosta/miniconda3/envs/env_name:
#
# Name Version Build Channel
alabaster 0.7.12 py37_0 anaconda
appdirs 1.4.3 py_1 conda-forge
appnope 0.1.0 py37_1000 conda-forge
asn1crypto 0.24.0 py37_0 anaconda
astor 0.7.1 py_0 conda-forge
atomicwrites 1.3.0 py_0 conda-forge
attrs 19.1.0 py_0 conda-forge
azure-common 1.1.23 pypi_0 pypi
azure-storage-blob 2.1.0 pypi_0 pypi
azure-storage-common 2.1.0 pypi_0 pypi
babel 2.7.0 py_0 anaconda
backcall 0.1.0 py_0 conda-forge
black 19.3b0 py_0 conda-forge
bleach 3.1.0 py_0 conda-forge
boto3 1.9.249 pypi_0 pypi
botocore 1.12.249 pypi_0 pypi
bzip2 1.0.8 h01d97ff_1 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
certifi 2019.11.28 py37_0 conda-forge
cffi 1.12.3 py37hb5b8e2f_0 anaconda
chardet 3.0.4 py37_1003 anaconda
click 7.0 py_0 conda-forge
commonmark 0.9.0 py_0 conda-forge
cryptography 2.7 py37ha12b0ac_0 anaconda
cycler 0.10.0 py_2 conda-forge
dbus 1.13.6 h2f22bb5_0 conda-forge
decorator 4.4.0 py_0 conda-forge
defusedxml 0.5.0 py_1 conda-forge
doc8 0.8.0 py_2 conda-forge
docutils 0.15.2 py37_0 anaconda
entrypoints 0.3 py37_1000 conda-forge
expat 2.2.5 h6de7cb9_1003 conda-forge
flake8 3.7.8 py37_1 conda-forge
flake8-bugbear 19.8.0 py_0 conda-forge
flake8-docstrings 1.5.0 pypi_0 pypi
flake8-mypy 17.8.0 pypi_0 pypi
freetds 1.1rc3 h6ad6909_1 conda-forge
freetype 2.10.0 h24853df_1 conda-forge
future 0.17.1 py37_1000 conda-forge
gettext 0.19.8.1 h46ab8bc_1002 conda-forge
glib 2.58.3 h9d45998_1002 conda-forge
icu 64.2 h6de7cb9_1 conda-forge
idna 2.8 py37_0 anaconda
ijson 2.5.1 pypi_0 pypi
imagesize 1.1.0 py37_0 anaconda
importlib_metadata 0.22 py37_0 conda-forge
ipykernel 5.1.2 py37h5ca1d4c_0 conda-forge
ipython 7.8.0 py37h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.5.1 py_0 conda-forge
jedi 0.15.1 py37_0 conda-forge
jinja2 2.10.1 py_0 conda-forge
jmespath 0.9.4 pypi_0 pypi
jpeg 9c h1de35cc_1001 conda-forge
jsonschema 3.0.2 py37_0 conda-forge
jupyter 1.0.0 py_2 conda-forge
jupyter_client 5.3.1 py_0 conda-forge
jupyter_console 6.0.0 py_0 conda-forge
jupyter_core 4.4.0 py_0 conda-forge
kiwisolver 1.1.0 py37ha1b3eb9_0 conda-forge
libblas 3.8.0 12_openblas conda-forge
libcblas 3.8.0 12_openblas conda-forge
libcxx 9.0.0 h89e68fa_1 conda-forge
libedit 3.1.20170329 hcfe32e1_1001 conda-forge
libffi 3.2.1 h6de7cb9_1006 conda-forge
libgfortran 4.0.0 2 conda-forge
libiconv 1.15 h01d97ff_1005 conda-forge
liblapack 3.8.0 12_openblas conda-forge
libopenblas 0.3.7 h4bb4525_1 conda-forge
libpng 1.6.37 h2573ce8_0 conda-forge
libsodium 1.0.17 h01d97ff_0 conda-forge
llvm-openmp 8.0.1 h770b8ee_0 conda-forge
markupsafe 1.1.1 py37h1de35cc_0 conda-forge
matplotlib 3.1.2 py37_1 conda-forge
matplotlib-base 3.1.2 py37h11da6c2_1 conda-forge
mccabe 0.6.1 py_1 conda-forge
mistune 0.8.4 py37h1de35cc_1000 conda-forge
more-itertools 7.2.0 py_0 conda-forge
mypy 0.720 pypi_0 pypi
mypy-extensions 0.4.1 pypi_0 pypi
nbconvert 5.6.0 py37_1 conda-forge
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 h0a44026_1002 conda-forge
notebook 6.0.1 py37_0 conda-forge
numpy 1.17.2 py37h6b0580a_0 conda-forge
openssl 1.1.1d h0b31af3_0 conda-forge
packaging 19.0 py_0 conda-forge
pandas 0.25.1 py37h86efe34_0 conda-forge
pandoc 2.7.3 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
parso 0.5.1 py_0 conda-forge
patsy 0.5.1 py_0 conda-forge
pbr 5.4.2 py_0 conda-forge
pcre 8.41 h0a44026_1003 conda-forge
pendulum 2.0.5 py37_0 conda-forge
pexpect 4.7.0 py37_0 conda-forge
pickleshare 0.7.5 py37_1000 conda-forge
pip 19.2.3 py37_0 conda-forge
plotly 4.1.1 py_0 plotly
pluggy 0.13.0 py37_0 conda-forge
pockets 0.7.2 py_0 conda-forge
pony 0.7.10 pypi_0 pypi
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 2.0.9 py_0 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
py 1.8.0 py_0 conda-forge
pyarrow 0.15.0 pypi_0 pypi
pycodestyle 2.5.0 py_0 conda-forge
pycparser 2.19 py37_0 anaconda
pycryptodomex 3.9.0 pypi_0 pypi
pydocstyle 4.0.1 pypi_0 pypi
pyflakes 2.1.1 py_0 conda-forge
pygments 2.4.2 py_0 conda-forge
pyjwt 1.7.1 pypi_0 pypi
pyodbc 4.0.27 py37h6de7cb9_0 conda-forge
pyopenssl 19.0.0 py37_0 anaconda
pyparsing 2.4.2 py_0 conda-forge
pyqt 5.9.2 py37h2a560b1_4 conda-forge
pyrsistent 0.15.4 py37h01d97ff_0 conda-forge
pysocks 1.7.0 py37_0 anaconda
pytest 5.1.2 py37_0 conda-forge
python 3.7.3 h93065d6_1 conda-forge
python-dateutil 2.8.0 py_0 conda-forge
pytz 2019.2 py_0 conda-forge
pytzdata 2019.3 py_0 conda-forge
pyyaml 5.1.2 pypi_0 pypi
pyzmq 18.1.0 py37hee98d25_0 conda-forge
qt 5.9.7 h8cf7e54_3 conda-forge
qtconsole 4.5.5 py_0 conda-forge
readline 8.0 hcfe32e1_0 conda-forge
recommonmark 0.6.0 py_0 conda-forge
requests 2.22.0 py37_0 anaconda
restructuredtext_lint 1.3.0 py_0 conda-forge
retrying 1.3.3 py_2 conda-forge
s3transfer 0.2.1 pypi_0 pypi
scipy 1.3.2 py37h82752d6_0 conda-forge
seaborn 0.9.0 py_2 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 41.2.0 py37_0 conda-forge
sip 4.19.8 py37h0a44026_1000 conda-forge
six 1.12.0 py37_1000 conda-forge
snowballstemmer 1.9.0 py_0 anaconda
snowflake-connector-python 2.0.1 pypi_0 pypi
sphinx 2.1.2 py_0 anaconda
sphinx-theme-material 1.0.0 pypi_0 pypi
sphinxcontrib-applehelp 1.0.1 py_0 anaconda
sphinxcontrib-devhelp 1.0.1 py_0 anaconda
sphinxcontrib-htmlhelp 1.0.2 py_0 anaconda
sphinxcontrib-jsmath 1.0.1 py_0 anaconda
sphinxcontrib-napoleon 0.7 py_0 conda-forge
sphinxcontrib-qthelp 1.0.2 py_0 anaconda
sphinxcontrib-serializinghtml 1.1.3 py_0 anaconda
sqlite 3.29.0 hb7d70f7_1 conda-forge
statsmodels 0.10.1 py37h3b54f70_2 conda-forge
stevedore 1.30.1 py_0 conda-forge
terminado 0.8.2 py37_0 conda-forge
testpath 0.4.2 py_1001 conda-forge
tk 8.6.9 h2573ce8_1003 conda-forge
toml 0.10.0 py_0 conda-forge
tornado 6.0.3 py37h01d97ff_0 conda-forge
traitlets 4.3.2 py37_1000 conda-forge
typed-ast 1.4.0 pypi_0 pypi
typing-extensions 3.7.4 pypi_0 pypi
unixodbc 2.3.7 h1de35cc_0 anaconda
urllib3 1.24.2 py37_0 anaconda
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.33.6 py37_0 conda-forge
widgetsnbextension 3.5.1 py37_0 conda-forge
xz 5.2.4 h1de35cc_1001 conda-forge
zeromq 4.3.2 h6de7cb9_2 conda-forge
zipp 0.6.0 py_0 conda-forge
zlib 1.2.11 h01d97ff_1006 conda-forge