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colebrookson/README.md

Hi I'm Cole πŸ‘‹

I am a computational biologist, currently a PhD student in the Carlson lab at Yale University, and with the Verena Institute.

My PhD research is mostly thinking about how we can understand and predict viral spillover risk. I also think a lot about food webs, fisheries, and the theory behind ecological forecasting πŸ“ˆ. I also have active research projects on computational pedagogy and metascience regarding publishing and equity in ecology specifically.

I am extremely passionate about open science and computational literacy in the biological sciences, and I teach introductory workshop series in programming and reproducibility methods for undergrad and grad students. πŸ–₯️

Here on my GitHub are all the projects I'm working on, a bit of a mixture of research projects and teaching materials. Also even though I'm not a software person by trade, I do love building little tools and fun projects for myself, as well as learning new languages.

You can learn more about me and my various research projects here

I absolutely love talking about software, statistical quandries, and fun ecological problems. If you think we have similar interests, reach out and let's have a virtual or in-person coffee β˜• Feel free to call me any pronouns, but I typically use he/him or they/them.

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  1. predictability predictability Public

    Forked from eco4cast/predictability

    Simulations exploring measures of predictability for time series data

    R

  2. r-hpc-reproducible-repo r-hpc-reproducible-repo Public template

    Extension of Verena's default R repository that includes capabilities with HPC.

    R

  3. seaway-distance seaway-distance Public

    A demo of how to calculate seaway distance using the `sf` package in R β›΅

    R

  4. stable-webs stable-webs Public archive

    How are food web "shapes" stable? πŸ“‰ πŸ“ˆ

    HTML

  5. theRmal-landscape theRmal-landscape Public

    How do resource and temperature constraints affect consumer abundance and subsequent infection dynamics?

    Mathematica

  6. viralemergence/pnpc viralemergence/pnpc Public

    What is the relationship between pathogens & planetary change?

    R 2 2