Releases: broadinstitute/warp
Releases · broadinstitute/warp
BuildIndices_develop
4.2.0
2025-09-10 (Date of Last Commit)
- Modified the SNSS2AddIntronsToGTF task to create a tarred STAR index alongside the intron-modified GTF file. This is a new output of the pipeline.
Imputation_develop
1.1.21
2025-09-03 (Date of Last Commit)
- Update UpdateHeader task to add an optional pipeline_header_line input that when supplied, will add a header line containing
this value to the header of the output vcf. Currently not used by this pipeline
Add optional pipeline header line input variable
ImputationBeagle_development_v2.0.2 TSPS-477 Imputation Beagle - add ability to write pipeline info to ou…
ImputationBeagle_develop
2.0.2
2025-09-03 (Date of Last Commit)
- Add optional pipeline_header_line input that when supplied, will add a header line containing this value to the header of the output vcf
ArrayImputationQuotaConsumed_develop
1.0.5
2025-09-03 (Date of Last Commit)
- Add optional pipeline_header_line input to match beagle imputation pipeline inputs
ArrayImputationQC_develop
1.0.2
2025-09-03 (Date of Last Commit)
- Add optional pipeline_header_line input to match beagle imputation pipeline inputs
local testing of beagle release process
test_imputation_beagle_local_v1.0.1 update qc and quota consumed wdl to match beagle imputation wdl (and …
atac_v2.9.2
2.9.2
2025-08-15 (Date of Last Commit)
- Added an option to input an aligned ATAC BAM file; this allows users to skip the ATAC alignment step if they already have an aligned BAM file
PairedTag_v2.1.8
2.1.8
2025-08-15 (Date of Last Commit)
- Added an option to input an aligned ATAC BAM file to the PairedTag pipeline; this allows users to skip the ATAC alignment step if they already have an aligned BAM file
Multiome_v6.1.3
6.1.3
2025-08-15 (Date of Last Commit)
- Added an option to input an aligned ATAC BAM file to the Multiome pipeline; this allows users to skip the ATAC alignment step if they already have an aligned BAM file