Added custom VariantClassification severity ordering.
#7673
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@xaviloinaz here's that feature you requested for configurable ordering of funotations via Let me know if this won't work for what you wanted to do. |
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droazen
suggested changes
Feb 18, 2022
src/main/java/org/broadinstitute/hellbender/tools/funcotator/FuncotatorArgumentDefinitions.java
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...in/java/org/broadinstitute/hellbender/tools/funcotator/BaseFuncotatorArgumentCollection.java
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src/main/java/org/broadinstitute/hellbender/tools/funcotator/FuncotatorUtils.java
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src/main/java/org/broadinstitute/hellbender/tools/funcotator/FuncotatorUtils.java
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src/main/java/org/broadinstitute/hellbender/tools/funcotator/FuncotatorUtils.java
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src/main/java/org/broadinstitute/hellbender/tools/funcotator/FuncotatorUtils.java
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...a/org/broadinstitute/hellbender/tools/funcotator/dataSources/gencode/GencodeFuncotation.java
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src/test/java/org/broadinstitute/hellbender/tools/funcotator/FuncotatorUtilsUnitTest.java
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src/test/java/org/broadinstitute/hellbender/tools/funcotator/FuncotatorUtilsUnitTest.java
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...oadinstitute/hellbender/tools/funcotator/dataSources/gencode/GencodeFuncotationUnitTest.java
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droazen
approved these changes
Mar 8, 2022
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VariantClassificationseverity ordering. This enables users to have variants annotated consistently in an alternate order by the results of their variant classification. (user requested)