Annotation header Ex. SnpEffVersion #140
Description
Hi Brent,
I am wondering how I could keep certain vcf header values after using vcfanno for example:
##SnpEffVersion and ##SnpEffCmd
After using vcfanno to merge this vcf with a VEP(ed) vcf I don't see these fields anymore.
Is there a way to include these headers in the output?
Here is my config.toml
[[annotation]]
file="/home/raony/dev/pynnotator/pynnotator/tests/ann_sample.100.hg38/snpeff/snpeff.output.vcf.gz"
fields = ["ANN"]
names = ["snpeff_eff"]
ops=["first"]
[[annotation]]
file="/home/raony/dev/pynnotator/pynnotator/tests/ann_sample.100.hg38/vep/vep.output.sorted.vcf.gz"
fields = ["CSQ"]
names = ["vep_csq"]
ops=["first"]