It is possible that this is caused by local corruption, although this is not a system that is known to corrupt data:

2015-07-29 18:13:35 Reindexing block file blk00201.dat...
2015-07-29 18:13:38 LoadExternalBlockFile: Deserialize or I/O error - Read attempted past buffer limitReindexing block file blk00202.dat...

At the least the fatal error should probably cancel the reindexing process (and be terminated with a newline).

I'll try running the troubleshooting tool on the block files and db tomorrow.