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sambamba index 0.6.7 takes 4x longer than 0.6.6 on the same files #345

@carsonhh

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@carsonhh

Simple command --> sambamba index -t 20 any_large_file.bam

0.6.7 rarely uses more than 5 threads under top while 0.6.6 uses all 20 I gave it.

Test on 105GB bam file using 20 threads.
0.6.6 --> 3m35.989s
0.6.7 --> 12m44.751s

I see the same pattern on all files on multiple machines (both AMD and Intel).

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