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@bhattlab

bhattlab

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  1. MGEfinder MGEfinder Public

    A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

    Python 124 18

  2. lathe lathe Public

    A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing

    Python 70 18

  3. kraken2_classification kraken2_classification Public

    Snakemake workflow for metagenomic classification with Kraken2

    Python 66 16

  4. phanta phanta Public

    Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes

    Python 65 11

  5. bhattlab_workflows bhattlab_workflows Public

    Computational workflows for metagenomics tasks, by the Bhatt lab

    Python 47 16

  6. SmORFinder SmORFinder Public

    A command line tool to identify and annotate small proteins in microbial sequencing datasets.

    Python 24 4

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