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@lcoombe lcoombe commented Dec 5, 2022

  • When mapping=ntLink is added to the tigmint-make command, use ntLink for mapping long reads to the draft assembly instead of minimap2
    • For this ntLink mapping approach, doesn't split the long reads into pseudo-linked reads
  • Add option to use memusg for benchmarking the pipeline (if found in PATH)
  • Bugfix in tigmint-cut
    • Could lead to distinct molecule extents being recognized as duplicates erroneously (More common to be seen when using ntLink mappings vs. minimap2)

@lcoombe lcoombe merged commit c704e82 into master Dec 5, 2022
@lcoombe lcoombe deleted the ntlink-mappings branch December 5, 2022 19:36
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