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@LokiLuciferase LokiLuciferase commented Jun 9, 2022

Hi,

When running metagenome simulations while outputting fastq files, with the most recent version of NanoSim 3.1, I found that read headers are empty (consisting only of the initial @ but no other information). It seems like right before finalization of a read, the header is set to the empty string once again. This PR fixes this.

I have attached a directory (test_case_nanosim.tar.gz) containing all required files for building a docker container which replicates the issue, and demonstrates the fix described in this PR, which can be built and executed by running docker build ..

@kmnip kmnip requested a review from saberhq June 9, 2022 20:10
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kmnip commented Jun 9, 2022

Good catch!

@kmnip kmnip self-assigned this Jun 28, 2022
@kmnip kmnip merged commit 8341c2f into bcgsc:master Jun 28, 2022
@kmnip kmnip requested review from kmnip and removed request for saberhq June 28, 2022 17:31
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kmnip commented Jun 28, 2022

@saberhq , I tested the code in a test simulation and the read name looks good.
Thanks @LokiLuciferase for your PR!

@kmnip kmnip removed their request for review June 28, 2022 18:10
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2 participants