Describe the bug

The value of a variable i gets overwritten if run uses any flags.

To Reproduce
Steps to reproduce the behavior:

1. Create the file a.bats:

bats_require_minimum_version 1.5.0

@test i {
  for ((i=0; i<3; i++)) {
    echo before $i
    run ! false
    echo after $i
  }
}

2. Run it:

bats --show-output-of-passing-tests a.bats

3. See what happens:

   before 0
   after 2

Expected behavior

I have expected the following output:

   before 0
   after 0
   before 1
   after 1
   before 2
   after 2

Environment (please complete the following information):

• Bats Version: 1.9.0
• OS: Linux
• Bash version: 5.2.15

Additional context
A variable i is not declared as local in a few functions in common.bash.