plot_gene() error #49
Description
Hello,
I'm looking at DTU using kallisto output and am having trouble getting plots.
> dtu_summary(avc_dtu)
category tally
1 DTU genes (gene test) 1513
2 non-DTU genes (gene test) 9951
3 ineligible genes (gene test) 3198
4 DTU genes (transc. test) 508
5 non-DTU genes (transc. test) 11574
6 ineligible genes (transc. test) 2580
7 DTU genes (both tests) 460
8 non-DTU genes (both tests) 9909
9 ineligible genes (both tests) 3198
10 DTU transcripts 584
11 non-DTU transcripts 83616
12 ineligible transcripts 64778
> dtu_switch_summary(avc_dtu)
category genes
1 Primary switch (gene test) 1357
2 Non-primary switch (gene test) 1476
3 Primary switch (transc. test) 468
4 Non-primary switch (transc. test) 469
5 Primary switch (both tests) 425
6 Non-primary switch (both tests) 430
When I try to plot genes that appear in the primary switch list,
> plot_gene(avc_dtu, "Tnc")
Error in seq.default(inv_range[1], inv_range[2], length.out = self$detail) :
'from' must be a finite number
In addition: Warning message:
Removed 52 rows containing non-finite values (stat_boxplot).
What is causing this?
Thank you!