Only load whole cell masks if nuclear_counts=False in generate_cell_table
#1107
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What is the purpose of this PR?
Closes #1097. Updates
generate_cell_tableto be compatible with updated ezSeg pipeline when nuclear masks need to be discarded.How did you implement your changes
By default, the updated
generate_cell_tableloads in all the masks, including nuclear, and adds them to the cell table. For pixel clustering, only the whole cell data is needed, so ifnuclear_counts=False, this mask type should not appear in the table.Remaining issues
Integration testing with Pixie/Nimbus needed.