Skip to content

Conversation

camisowers
Copy link
Contributor

@camisowers camisowers commented Jun 7, 2023

If you haven't already, please read through our contributing guidelines before opening your PR

What is the purpose of this PR?

Closes #1001. We were using the incorrect keyword (dataRescale) to indicate scale of the image, so all segmentations were being done at the default 20x.

How did you implement your changes

Updated the json file we send to the deepcell server to now use {"jobForm": "scale" = scale}.

Screenshot 2023-06-06 at 5 15 08 PM (2)

I tested running the segmentation notebook with rescale factor 1 and 0.33 and now get different results.

Screenshot 2023-06-07 at 10 59 27 AM (2) Screenshot 2023-06-07 at 10 59 27 AM (2) copy

Remaining issues

N/A

@camisowers camisowers added the bug Something isn't working label Jun 7, 2023
@camisowers camisowers self-assigned this Jun 7, 2023
@camisowers camisowers requested review from cliu72 and ngreenwald June 7, 2023 18:17
@ngreenwald ngreenwald merged commit 2af302d into main Jun 7, 2023
@ngreenwald ngreenwald deleted the deepcell_mystery branch June 7, 2023 19:28
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

Successfully merging this pull request may close these issues.

rescale_factor not affecting segmentation
2 participants