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STAR-2.7.11b: Segfault in sjdbBuildIndex() -> funCalcSAi()

Status: Open.

#2657 In alexdobin/STAR;

· rowanworth opened on Aug 20, 2025

Slightly different SJs from first pass of twopassMode Basic versus manually running STAR 1-pass (with parameters supposedly modified to match)

Status: Open.

#2656 In alexdobin/STAR;

· hmgeiger opened on Aug 19, 2025

STARdiploid or waspOutputMode - mapping reads from F1 hybird mice back to the parental strains

Status: Open.

#2655 In alexdobin/STAR;

· linpei26 opened on Aug 6, 2025

discrepancy between number of genes using <code>--QuantMode</code> vs FeatureCounts

Status: Open.

#2654 In alexdobin/STAR;

· JCSzamosi opened on Aug 5, 2025

SJ features.tsv is empty

Status: Open.

#2653 In alexdobin/STAR;

· guptas2005 opened on Jul 30, 2025

How to run --soloType CB_UMI_Complex without a whitelist

Status: Open.

#2652 In alexdobin/STAR;

· LeonHafner opened on Jul 28, 2025

% of reads unmapped: too short

Status: Open.

#2651 In alexdobin/STAR;

· Niwas88 opened on Jul 27, 2025

Reason "Average mapped length" could be notably LARGER than "Average input read length"?

Status: Open.

#2649 In alexdobin/STAR;

· apredeus opened on Jul 16, 2025

Issue with coordinate in Chimeric.out.junction

Status: Open.

#2648 In alexdobin/STAR;

· dincarnato opened on Jul 7, 2025

Add mate cigar for all reads

Status: Open.

#2645 In alexdobin/STAR;

· charlesshale opened on Jul 3, 2025

When STARsolo is given an already aligned BAM file as input, does it re-perform sequence alignment?

Status: Open.

#2644 In alexdobin/STAR;

· xyz202310 opened on Jul 1, 2025

STARsolo Velocyto read map is zero

Status: Open.

#2643 In alexdobin/STAR;

· falsetry1514 opened on Jun 29, 2025