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@acidgenomics

Acid Genomics

Software for bioinformatics and functional genomics.

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  1. koopa koopa Public

    Shell bootloader for bioinformatics.

    Shell 11 1

  2. dotfiles dotfiles Public

    Configuration files shared between machines.

    Vim Script

  3. r-cellosaurus r-cellosaurus Public

    Cellosaurus identifier mapping toolkit.

    R 3 1

  4. r-acidgenomes r-acidgenomes Public

    Toolkit for downloading and processing genome annotations.

    R 4

  5. r-acidplots r-acidplots Public

    Functions for plotting genomic data.

    R 5 1

  6. r-deseqanalysis r-deseqanalysis Public

    Toolkit for performing differential expression with DESeq2.

    R 3 1

Repositories

Showing 10 of 31 repositories
  • koopa Public

    Shell bootloader for bioinformatics.

    acidgenomics/koopa’s past year of commit activity
    Shell 11 AGPL-3.0 1 7 0 Updated Aug 21, 2025
  • dotfiles Public

    Configuration files shared between machines.

    acidgenomics/dotfiles’s past year of commit activity
    Vim Script 0 AGPL-3.0 0 1 0 Updated Aug 21, 2025
  • r-panther Public

    PANTHER database annotations.

    acidgenomics/r-panther’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated May 26, 2025
  • r-eggnog Public

    EggNOG database annotations.

    acidgenomics/r-eggnog’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated May 26, 2025
  • r-acidtest Public

    Reference data for Acid Genomics unit tests.

    acidgenomics/r-acidtest’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated May 25, 2025
  • r-aciddevtools Public

    Trusty sidekick for R package development.

    acidgenomics/r-aciddevtools’s past year of commit activity
    R 3 AGPL-3.0 0 0 0 Updated May 25, 2025
  • r-acidcli Public

    Interative R command line interface toolkit.

    acidgenomics/r-acidcli’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated Apr 25, 2025
  • r-acidbase Public

    Low-level base functions imported by Acid Genomics packages.

    acidgenomics/r-acidbase’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated Apr 24, 2025
  • r-acidgenerics Public

    S4 generic functions for Acid Genomics packages.

    acidgenomics/r-acidgenerics’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated Apr 24, 2025
  • r-acidgenomes Public

    Toolkit for downloading and processing genome annotations.

    acidgenomics/r-acidgenomes’s past year of commit activity
    R 4 AGPL-3.0 0 2 0 Updated Apr 22, 2025
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